Detailed information on CNT3026939


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBNAT000214, E-value = 1e-17

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3019911Populus trichocarpaCitrullus lanatus34.1912.4283.7580forward
CNT30559910Populus trichocarpaActinidia chinensis19.6621.193.4846forward

Expression of CNT3026939

Peptides detected in this lncRNA

>peptide 1 (41 aa)
ALHSQQGCKEARQFLDGKKSTYVSRQCRGSICSHQRQGIQC*

>peptide 2 (77 aa)
VLFILNRAVKKLVNFWMERSQPTFLVSVGEVYALISARGYNVEFGIKDINTMNNSIEARESESSMATLQSERSICGPY

Sequence

>CNT3026939
GTGCTCTTCATTCTCAACAGGGCTGTAAAGAAGCTCGTCAATTTCTGGATGGAAAGAAGTCAACCTACGTTTCTCGTCAGTGTAGGGGAAGTATATGCTC
TCATCAGCGCCAGGGGATACAATGTTGAATTTGGGATCAAAGACATCAATACCATGAACAACTCTATAGAGGCCAGGGAGAGTGAAAGCAGTATGGCCAC
ACTTCAAAGCGAGAGATCCATTTGCGGACCATAC