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Detailed information on CNT3026929


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SWW6|CESA7_ARATH, E-value = 6e-56

BLAST vs NONCODE:
NONPOPT001661, E-value = 8e-129

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671696Populus trichocarpaSetaria viridis23.6651.3680.3132forward
CNT30500458Populus trichocarpaCoffea canephora52.5152.2384.3293forward
CNT30216Populus trichocarpaZea mays25.4546.180.99142forward
CNT30608876Populus trichocarpaGossypium raimondii21.8622.7282.79122forward

Expression of CNT3026929

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MASETPATTPTRLMIKIVVGGISRVVHLKAYSSPKSSSSVALDVTVKFVSIPAKTFRRPWTTAKR*

>peptide 2 (53 aa)
KENVFSFQLQNWVQCTLLHKIFTLTLFLVHLHLVSLYIAYRIPLEAGCTCIFY*

>peptide 3 (47 aa)
MHIATQNFHSNFIPCASPSCQFIHRISYSLRSRMHMYLLLMHKSTRK*

Sequence

>CNT3026929
TAAGGAAAATGTTTTTTCATTCCAATTACAAAACTGGGTTCAATGCACATTGCTACACAAAATTTTCACTCTAACTTTATTCCTTGTGCATCTCCATCTT
GTCAGTTTATACATCGCATATCGTATTCCCTTAGAAGCAGGATGCACATGTATCTTCTATTGATGCACAAATCAACTAGAAAATAAACACACTTTTAACA
GTTGAGTCCACATTGCTTGGTGTCAGGTCCCCATGACTGGTACCCATTGTTTATGGCATCTGAGACTCCAGCAACAACTCCAACAAGGTTGATGATTAAG
ATAGTGGTTGGAGGGATAAGCAGGGTTGTCCATTTAAAGGCATATAGCTCTCCAAAATCGTCATCGTCTGTTGCCTTGGATGTGACAGTGAAGTTTGTGT
CGATACCTGCTAAAACTTTCAGAAGACCTTGGACAACAGCAAAGAGGTGAGCTGATACACCACCTATAACCCAGAACTGCTCGTTTCTCCACCATTCCTC
AATGCTTACTCCGCTCCATCTGAGCTCAAGAATGCCCGTGGAAAAGATTGACAAAAAC