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Detailed information on CNT30268958


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9M3K5|CLPP_SPIOL, E-value = 2e-83

BLAST vs NONCODE:
NONCSAT000277, E-value = 6e-44

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30730377Chenopodium quinoaCorchorus capsularis12.4222.2889.1392forward
CNT30504293Chenopodium quinoaNicotiana attenuata53.7115.7691.71398forward
CNT3045660Chenopodium quinoaPrunus dulcis32.795892.18243forward
CNT30588249Chenopodium quinoaMusa acuminata15.3824.6288.6114forward
CNT30173048Chenopodium quinoaTrifolium pratense13.926.2183.5103forward
CNT30143841Chenopodium quinoaMedicago truncatula28.746.6580.75213forward
CNT3060029Chenopodium quinoaArabidopsis lyrata52.6329.2189.74390forward
CNT3083483Chenopodium quinoaBrassica juncea45.6179.3486.98338forward
CNT30598582Chenopodium quinoaFraxinus excelsior36.4482.3295.19270forward
CNT30607170Chenopodium quinoaGossypium raimondii37.1138.0489.82275forward
CNT30218200Chenopodium quinoaKalanchoe fedtschenkoi64.3742.489.52477forward
CNT30655370Chenopodium quinoaRosa chinensis53.7134.0291.96398forward
CNT30154187Chenopodium quinoaPrunus persica53.7148.4292.21398forward
CNT3057113Chenopodium quinoaAmborella trichopoda34.828.9885.66258forward

Expression of CNT30268958

Peptides detected in this lncRNA

>peptide 1 (33 aa)
LRCLIFISFVVQQSQSFFLIRKIRKKFFVLFQT*

>peptide 2 (49 aa)
PLLDIYFVCSSAIPKFLFDPKNKEEIFCTLSNINRVFFIKKVCDATTDS*

>peptide 3 (57 aa)
MYIWSNKLHGIINSYSGYYPPTRRIYKQIQIFGIILDTEIYHKTNKLIRDLAINFLT*

Sequence

>CNT30268958
CTCCGTTGCTTGATATTTATTTCGTTTGTAGTTCAGCAATCCCAAAGTTTCTTTTTGATCCGAAAAATAAGGAAGAAATTTTTTGTACTCTTTCAAACAT
AAATAGAGTTTTTTTCATAAAAAAAGTTTGTGACGCTACAACGGACTCCTGATATAAAAAAATCAGGAATACTCTTCATCTCATACTACTCTTTCGATAC
CCAATCGAATGTTTTGAAAAGAAAATAGAAAAAAATTTTCTCATATCGAATTCAAAGTGCCATGCTATTATTACTTAATATATTTCATACAGTGAAGGCA
TAGTCTTTTTTTCTCAAATAAAAAACCCATTGGCGCCAAGCGTGAGGGAATGCTAAACGTTTGGTAATTTCTCCTCCGACCAGGATAAAGGATCCCATTG
AAGCAGCTAACCCCATGCATATTGTATGTACATCTGGTCGAACAAATTGCATGGTATCATAAATAGCTACTCCGGGTATTACCCACCCACCAGGAGAATT
TATAAACAAATACAAATCTTTGGTATCATCCTCGATACTGAGATATACCATAAGACCAATAAGTTGATTCGAGATCTCGCTATCAACTTCTTGACCTAAA
AAAAGTAATCTTTCTCGATAAAGTCGGTTGTATACGTCAACCCAAGCTGCATCTTCCTCTCCAGGACTTCGAAAGGGAACTTTTGGAACACCAATAGGCA
TTAAATGAAAGAAAAAAATTAAGTACTCTATTTCACTTTAA