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Detailed information on CNT30268105


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LZI2|UXS2_ARATH, E-value = 2e-120

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30703138Chenopodium quinoaQuercus lobata42.0767.3781.3353forward
CNT3021247Chenopodium quinoaCitrullus lanatus43.1539.3184.25362forward
CNT3068683Chenopodium quinoaQuercus suber43.1573.5881.49362forward
CNT3098150Chenopodium quinoaSolanum tuberosum41.4871.0281.9348forward
CNT30182233Chenopodium quinoaSecale cereale17.423.4781.51146forward
CNT30539234Chenopodium quinoaBrassica napus47.9143.9380.1402forward
CNT30511842Chenopodium quinoaSolanum lycopersicum41.4875.9882.18348forward
CNT30143836Chenopodium quinoaMedicago truncatula49.2370.8485.47413forward
CNT30261302Chenopodium quinoaBrassica rapa47.4476.9880.4398forward
CNT30339698Chenopodium quinoaEragrostis tef20.0213.680.95168forward
CNT30477892Chenopodium quinoaArabidopsis halleri47.7937.4879.8401forward
CNT30580107Chenopodium quinoaEchinochloa crusgalli17.428.1380.82146forward
CNT30726386Chenopodium quinoaLupinus angustifolius53.2849.7282.1447forward

Expression of CNT30268105

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MLMSMLDDEVFDGVREKINVAMPMPRTRNTSRCSRRR*

>peptide 2 (37 aa)
MGSGRRSMWRCRCRGRGTRVVAREEGSESDELRLAMV*

>peptide 3 (88 aa)
MFVMNRGSRASQMIDLINLQQKRLNDVVSDQFKPRVSKMMHHILFSPGKEIINNNHTITSRNQTVHKMRPDKPGPTRHNYPQPFSFQP*

Sequence

>CNT30268105
ACCAATGGGATTAACATTGCCCCAGTAAGTCTCTTTCTGAGGGTGCTCCAAAGGGTCACCATAAACTTCACTAGTACTTGTTAGAAGGAACCTTGCACCT
ACTCTCTTCGCCAATCCTAACATGTTCAATGTTCCTACCACATTTGATATGATAGTTTTGACAGGGTTATGTTTGTAATGAACAGGGGAAGCAGGGCAAG
CCAAATGATAGATCTGATCAACCTCCAACAAAAGAGGCTCAACGACGTCGTGTCGGATCAATTCAAACCTAGGGTTTCCAAAATGATGCATCACATTCTC
TTTTCTCCCGGTAAAGAAATTATCAACAACAATCACACTATCACCTCTCGCAATCAAACGGTCCACAAGATGCGACCCGACAAACCCGGCCCCACCCGTC
ACAACTATCCGCAACCCTTTTCGTTTCAGCCCTAATGGGACCTTCCCAGATCTAAACCCATCACTGACCCGACCATGGTGGATCGGAATCAACCGAGTTG
ACTCGGCGGTCAGGAACGATTCCCCGCCGATTGAATCGTGCATGTTGATGTCAATGTTAGACGACGAGGTGTTTGATGGGGTCAGGGAGAAGATCAATGT
GGCGATGCCGATGCCGAGGACGAGGAACACGAGTCGTTGCTCGCGAAGAAGGTAGTGAATCGGACGAGTTACGGTTAGCCATGGTTTAAGAGGCTTTGGT
GAGTCGTACTCGTCGGATTTGAGGTGGGCTTCATGTCCGCCTCGGAAGATCAGCTCCGACGCCATTAGTTTAATCGGCGGAGTTGATAAGTTGAGATCGA
GTCAAGGAAGTTTGAAGGGGGGAGAATGTGAGAATGAGG