« Back to Chenopodium quinoa search


Detailed information on CNT30268066


BLAST search results

BLAST vs Swiss-Prot:
sp|Q08183|RBS3_MESCR, E-value = 7e-56

BLAST vs NONCODE:
NONCQUT001608, E-value = 1e-69

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30261376Chenopodium quinoaBrassica rapa10.992087.580forward

Expression of CNT30268066

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MHCTLPPLLAREVTSTLLFLVTGKAEVDFKPLNGATMLA*

Sequence

>CNT30268066
AATTTGGCAAAATGTATGAAAGATTAATAGTTGATGACTGGCAAAAAAGGGAGATATCATTTATAATTAGGAAATAAATCAACTTTAAATATAACAATCA
CATCCCTCTATATGAACACATACATATTCTATTTGAATCCGGGATAAATGGAATTAATCACAAACAAGATAGCAAAAAACAATCAAACTAGTACCCAGCA
GGCTTGTAGGCAATGAAACTGATGCATTGCACTTGACGGTAGCTGTCGAATCCAATGATTCTGATGAAGGCGTTGGGGTAAGCCTTCTTGGCTTCCTCGA
GCTCGTTAACAACCTGGGTCGGGTATTGAACTTCACTAAGCAAAGACTCAGTGGTGAGTGGTGGAAGGTAAGACAAGGTCTCGAACTTCTTCTTGCCAAC
TGGTGGCCATACTTGCATGCATTGTACTCTGCCTCCATTGCTAGCAAGAGAAGTAACATCAACGTTGCTCTTCCTAGTAACAGGGAAAGCTGAAGTGGAC
TTCAAACCATTGAATGGTGCTACCATGTTAGCCTGAGCAGTGCTGGCAGTGGCCACGGAGGCAGCGGCGTTCATCAAACTAGAAGCCATGGTTTTATGTA
ATTTGTTACTCACTCTAGCTTAGCTCTTTTCTTTTGATTACTTCTTTGTTGAATGAGTAATATTGATGTATGTACGGTCCAATTTATAATAGTATGAAAT
AACTCAAGCTAATCTTCTAAGATGTATC