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Detailed information on CNT30268023


BLAST search results

BLAST vs Swiss-Prot:
sp|Q09020|PR4_PHAVU, E-value = 2e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639598Chenopodium quinoaNymphaea colorata29.4124.2982.07145forward
CNT3084841Chenopodium quinoaVigna radiata25.3523.4184.8125forward

Expression of CNT30268023

Peptides detected in this lncRNA

>peptide 1 (39 aa)
LTYFKALNIKTTSSSTLQNLTAKLSNFPEKIQRREKIAF*

>peptide 2 (46 aa)
MIYDVNSHLFRSFLSQKGGAADKRKTEDKPKEQRPKASENKPVMNE*

>peptide 3 (52 aa)
LNLLQSSQYKNHLVVNLTKPYRKIVEFSRKNSEERENRILGFLNIIFTNQTL*

Sequence

>CNT30268023
CCTTAACCTACTTCAAAGCTCTCAATATAAAAACCACCTCGTCGTCAACCTTACAAAACCTTACCGCAAAATTGTCGAATTTTCCAGAAAAAATTCAGAG
GAGAGAGAAAATCGCATTTTAGGGTTTCTGAACATCATCTTTACAAATCAAACACTATGATTTACGACGTTAACTCTCATCTCTTCCGTTCTTTCCTCAG
CCAGAAGGGTGGTGCTGCTGATAAGAGGAAAACAGAGGATAAGCCCAAGGAGCAGAGACCCAAAGCTAGTGAGAACAAGCCTGTGATGAATGAGTAATTT
TTGAGCTGATTGGTGGACAACTGTTTGATGTTAGCATGTAATAGCTGTAGTGACATGAATTGTTCCTTTATGTAGCAGCTTATAATTTGAAATGGGATAA
GAAAGAACTTTTAGCTTGTTATTATGTGAGAAAAGTTCTTGTGAGTTTGTTGATTTTGAAGTTTTTAAATATCTGATTATTTTTTCAAAAAAA