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Detailed information on CNT3026780


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30270249Populus trichocarpaChenopodium quinoa20.969.480.32188forward
CNT30636129Populus trichocarpaCapsicum annuum26.3149.3785.59236forward
CNT30145579Populus trichocarpaMedicago truncatula16.7257.0380.67150forward
CNT30314324Populus trichocarpaCamelina sativa28.5469.9580.86256forward
CNT30217164Populus trichocarpaKalanchoe fedtschenkoi6.5821.6989.8359forward
CNT30346665Populus trichocarpaEragrostis tef20.2951.8581.87182forward
CNT30362201Populus trichocarpaSorghum bicolor13.645.1982.79122forward
CNT30151225Populus trichocarpaBrachypodium distachyon25.0870.9878.67225forward
CNT30577134Populus trichocarpaOryza barthii15.9444.9780.42143forward

Expression of CNT3026780

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MAYSSPKSSSSVALDVTVKFVSIPAKTFRRPWTTAKR*

>peptide 2 (47 aa)
MHIATQNFHSNFIPCASPSCQFIHRISYSLRSRMHMYLLLMHKSTRK*

>peptide 3 (62 aa)
WAVSVRTSDKENVFSFQLQNWVQCTLLHKIFTLTLFLVHLHLVSLYIAYRIPLEAGCTCIFY*

Sequence

>CNT3026780
TTTGGGCTGTTAGTGTGAGAACGAGTGATAAGGAAAATGTTTTTTCATTCCAATTACAAAACTGGGTTCAATGCACATTGCTACACAAAATTTTCACTCT
AACTTTATTCCTTGTGCATCTCCATCTTGTCAGTTTATACATCGCATATCGTATTCCCTTAGAAGCAGGATGCACATGTATCTTCTATTGATGCACAAAT
CAACTAGAAAATAAACACACTTTTAACAGTTGAGTCCACATTGCTTGGTGTCAGGTCCCCATGACTGGTACCCATTGTTTATGGCATATAGCTCTCCAAA
ATCGTCATCGTCTGTTGCCTTGGATGTGACAGTGAAGTTTGTGTCGATACCTGCTAAAACTTTCAGAAGACCTTGGACAACAGCAAAGAGGTGAGCTGAT
ACACCACCTATAACCCAGAACTGCTCGTTTCTCCACCATTCCTCAATGCTTACTCCGCTCCATCTGAGCTCAAGAATGCCCGTGGAAAAGATTGACAAAA
ACAAGCCAATGAAGAAAAGACTTGCAAAGTAAGCAGGCAGATGGCAGGGAGGCAACAGTATGCAACGAGTGCTAAGGAGGTGAAGGGGTAGATAGTTGTG
TTCACATACGCAAACCTCTCGAGCCACTTGAGCTTTCCTTCCTTGTAGCCGTACAACATAGGGCTGTGACGACTGAAGAAAATTTCAACAGAACCAAGAG
CCCATCGGAGCACTTGGTTGAGCCGATCTGATAGATTGATGGGAGCTGAACCCTTAAATGCAGCTCTCTTTGGCATACAGTAAATAGACCTCCAGCCACG
ACAATGCATCTTAAAACCTGTCAGAATATCCTCTGTGATCGAACCGTAAATCCAGCGTAAATCCAGCCCAGCTGCACAGGAGAAAGGCAAATTTATT