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Detailed information on CNT3026679


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01781|SAHH_PETCR, E-value = 4e-98

BLAST vs NONCODE:
NONGMAT001730, E-value = 8e-29

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30585997Populus trichocarpaMusa acuminata8.8541.581.9105forward
CNT3084173Populus trichocarpaVigna radiata14.4224.5781.87171forward
CNT30659902Populus trichocarpaTriticum dicoccoides13.9153.5780165forward
CNT30611972Populus trichocarpaArabis alpina6.3231.5186.6775forward
CNT30570586Populus trichocarpaVitis vinifera13.2422.7583.44157forward

Expression of CNT3026679

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MELESHKHSKTVIFASSRRQNIRSSKDSFATNL*

>peptide 2 (52 aa)
MVVRGRIQRGRTSIQAFQLRPAQFRDGRSQPGTSPSPCTHDRLLFSRQAKPL*

>peptide 3 (45 aa)
MILSGEDIARTPTNLSTQGGQGFDQDSGLDSHVKRSGNLGSLEWL*

Sequence

>CNT3026679
CTGTTTGACCAAAACAGGAAATGAAATCATGGAAAGCCCGATTAACCAATTCTGCAATCATGCCATCAACAGCTGATTCTTACAAAAAAATAAAATGAAC
TCATAATATTCATCTAGAAACTTCATACTGCATGACACAAACAGCTGAGCACTAATAGTCAAATCGACTGATTAACAGTGCCTTTAGTTCCAATGGAGTT
AGAATCACACAAACATTCCAAAACTGTCATTTTTGCTTCTTCAAGAAGACAAAATATTAGATCTTCAAAGGATTCTTTCGCCACAAACCTCTAAAAAATT
TCCTTAGAAAAATCCACACCACAATTGAATCAAACTAAAAAAATCAAGTAAATATCAGATCTAAAACTCAATTATCATTTTGAAAACACCAATATGAATC
ATATGAGATCTGAAACATAAAACACAAAAGACATAACAGATCTAAGCAACAAAAACCCAGATCTAAAAGGCAGAAAAAACAGTACCTTGCTCTTGGTCAC
AGAGTCGTTAACATTAATGGCAGGGAAAAGCAAAGTCCCATTAGCCTGCATTTGATACAATCTCTTAACACCAGTTGTGGTTTCCTCTGAAACACCAACC
AATCTTTCCTTCATCTTGTGATACTTCATGGGATCACTCTTCAACCCATCTCTAATAATTGTCAAAACAAGCTGAAACTCTACATTATCAGTCGAAGCTG
GATCTGGCAAAACACCAGTCTTCTCATAAATCTCCTCAGCTTTCACACCCTCGTGAATCAAGAGAGTAGCATCACCACCATCATCAACAATCAAATCAGG
ACCACCACCCGGGCAAAAACAGCAGCTGAGTCACGTGCAATAGCTGCGGCGGCATGATCTTGAGTGGAGAAGATATTGCAAGAACACCAACGAACCTCAG
CACCCAAGGCGGTCAAGGTTTCGATCAAGACAGCGGTTTGGATAGTCATGTGAAGAGATCCGGTAATCTTGGCTCCCTTGAATGGTTGTGAGGGGCCGAA
TTCAGCGCGGCAGGACATCAATCCAGGCATTTCAACTTCGGCCAGCTCAATTTCGAGACGGCCGAAGTCAGCCTGGGACAAGTCCTTCACCTTGTACGCA
CGACCGCTTGTTGTTTTCTCGACAAGCAAAGCCATTGTAGGAGAAAGAAGGGAAGATGAGAAGAGTTATTTTCCTTCACCCTCGAT