Detailed information on CNT30266730


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672625Chenopodium quinoaSetaria viridis24.6488.4686.59276forward
CNT30373104Chenopodium quinoaArabidopsis thaliana17.0522.7787.96191forward
CNT30524850Chenopodium quinoaPhaseolus vulgaris18.4828.6784.06207forward
CNT30628558Chenopodium quinoaVigna unguiculata18.5724.8285.1208forward
CNT30711739Chenopodium quinoaGlycine max25.8924.2384.48290forward
CNT30310308Chenopodium quinoaCamelina sativa15.1873.5984.71170forward
CNT3013982Chenopodium quinoaZea mays17.9569.3186.57201forward
CNT30367875Chenopodium quinoaSorghum bicolor19.0225.7688.73213forward
CNT30570759Chenopodium quinoaVitis vinifera18.7537.3784.76210forward

Expression of CNT30266730

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MVFSSRYFSGITGLITCSFKSAAISSLVTVSSC*

>peptide 2 (33 aa)
MHQEDGEIIFVTQIFHNYYQRAHITFFRLLLGS*

>peptide 3 (30 aa)
MTKLVFVQVSQATLLSGSCSRQASSTASEI*

>peptide 4 (91 aa)
MLLQVSGNLIVGNSLIVLSRDKDGVDTDWNHGTVLVVVLNSDLGLAIRPQPWGSAAQCIPRPCSCQHQDPHRQTQTQCCGMSVGQSSRSLH*

>peptide 5 (37 aa)
MGLCCSMYTKTLQLSASRPTSADTNPMLRHVCRTIFS*

>peptide 6 (76 aa)
MQLFYKHNAAILLLTKPPNNHISVSPTINLPANKEIEKERETKKTLILWPIQKHFIYSFWLESSCSLWRRSGHLLY*

Sequence

>CNT30266730
TATGCATCAAGAAGACGGTGAAATTATTTTTGTAACGCAAATATTTCATAACTACTATCAACGAGCACACATTACATTTTTTCGGTTGCTGCTCGGCAGC
TGATCCCTTTCTAGCACTGTAAAAAAACATACATATGCAGCTCTTTTACAAACATAATGCTGCCATTTTACTACTAACAAAACCTCCCAACAACCACATT
TCTGTTTCTCCAACAATCAACTTACCCGCAAACAAAGAAATAGAAAAAGAAAGGGAAACTAAAAAGACATTAATATTGTGGCCCATACAAAAGCATTTTA
TATATTCCTTTTGGTTAGAGAGCAGCTGCAGCCTGTGGAGGAGATCCGGGCACTTGCTTTATTGATCAAAAATATTAATCAATGAATTCATAGACTTCAC
TCGACTTCTCCGGTTTAAGCTTGGGGCTTCTCCCACTTGAGGGGCTTGACAGTCTCCCATGTGAAGTCTGCGTCGTCCCTACCGAAGTGTCCGTGGAAGA
TGGTCTTCTCGTCAAGGTACTTCTCTGGGATAACAGGCTTGATCACATGCTCCTTCAAGTCAGCGGCAATCTCATCGTTGGTAACAGTCTCATCGTGCTG
AGTAGAGATAAGGACGGTGTGGACACGGATTGGAACCATGGCACCGTTCTCGTTGTAGTACTCAACAGTGACTTGGGTCTTGCCATCAGGCCTCAACCAT
GGGGCTCTGCTGCTCAATGTATACCAAGACCTTGCAGTTGTCAGCATCAAGACCCACATCGGCAGACACAAACCCAATGTTGCGGCATGTCTGTCGGACA
ATCTTCTCGTAGTCTACATTAGCCTTGGTGGTGATCTCACCAAAGACCATGACCAAGTTGGTCTTTGTGCAGGTCTCACAAGCAACCTTGCTCTCGGGGT
CTTGCTCAAGGCAAGCATCAAGCACTGCATCAGAGATCTGATCACATAGCTTGTCTGGGTGTCCCTCGTTCACGGATTCGGAGGTGAATAGGAAGGTGTC
GACTGCGGCGGCCATTTTTAAAACTAACGAAGAAATCCCCGAGTAGCAAAAGCTGGAAATGAGGAGAGAGAAAGTAGAGGGAGGAGAGAGAAAGTCCGAG
TCTTGTTATATGATTTGCAG