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Detailed information on CNT3026673


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01781|SAHH_PETCR, E-value = 5e-89

BLAST vs NONCODE:
NONBNAT006042, E-value = 2e-47

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675951Populus trichocarpaSetaria viridis21.0682.9284.42199forward
CNT30639580Populus trichocarpaNymphaea colorata17.8837.2282.25169forward
CNT30529934Populus trichocarpaEucalyptus grandis15.0334.0585.21142forward
CNT30517189Populus trichocarpaJuglans regia14.635.4886.23138forward
CNT30375086Populus trichocarpaArabidopsis thaliana27.6236.485.82261forward
CNT30200315Populus trichocarpaPisum sativum13.4424.6187.4127forward
CNT3076639Populus trichocarpaBrassica juncea28.4742.184.01269forward
CNT30612366Populus trichocarpaArabis alpina26.2491.5183.06248forward
CNT30651401Populus trichocarpaRosa chinensis16.0856.7293.42152forward
CNT30680065Populus trichocarpaTriticum urartu20.5351.1983.51194forward
CNT30354796Populus trichocarpaLactuca sativa43.4978.1480.29411forward
CNT30573685Populus trichocarpaVitis vinifera15.4537.4485.62146forward
CNT30151326Populus trichocarpaBrachypodium distachyon14.2933.2585.19135forward
CNT30103811Populus trichocarpaOryza rufipogon14.526.7685.4137forward
CNT30578287Populus trichocarpaOryza barthii15.4527.785.62146forward
CNT30723196Populus trichocarpaLupinus angustifolius28.4733.7588.1269forward

Expression of CNT3026673

Peptides detected in this lncRNA

>peptide 1 (44 aa)
IIPRTPIQNLIKLNPMCSFLRDRRSYIFLPNLPHQNTNPKKSKA*

Sequence

>CNT3026673
ATTATCCCACGCACCCCCATCCAAAACCTTATTAAATTAAATCCCATGTGCTCTTTTCTCCGAGATCGCAGATCATATATTTTCCTCCCAAATCTTCCCC
ACCAAAACACAAATCCTAAAAAATCCAAAGCCTGATATTCTAAGACAAATCATCAGCAAGATACAAAAGAAACAATAGCGCCGTCCAAACAGATGGTCTT
TCCTCAAATTCCATCTCTCAGTACCTGTACTGAGCAGGCTTGTAGGGACCCTCAACTGGAACGTTGATGTAGTCTGCCTGGTCCTTGGAGAGCTTGGTGA
GCCTGGCTCCAAGCTTGCCAAGGTGAAGGGAAGCAACCTTCTCATCAAGGTGCTTGGGCAAAACATAGACCTTCTTCTCATACTTGCCGGATGTCTTCTC
GTTCCACAGCTCAAGCTGAGCAATCACCTGGTTGGTGAATGAGCAGGACATCACAAAACTGGGGTGACCAGTGGCACAACCCAGGGAAAAGCAAAGTCCC
ATTAGCCTGCATTTGATACAATCTCTTAACACCAGTTGTGGTTTCCTCTGAAACACCAACCAATCTTTCCTTCATCTTGTGATACTTCATGGGATCACTC
TTCAACCCATCTCTAATAATTGTCAAAACAAGCTGAAACTCTACATTATCAGTCGAAGCTGGATCTGGCAAAACACCAGTCTTCTCATAAATCTCCTCAG
CTTTCACACCCTCGTGAATCAAGAGAGTAGCATCACCACCATCATCAACAATCAAATCAGGACCACCACCCGGGCCCCAATCAAGAGCTCTCTCAGTGCA
CCACCAATACTCCTGGAGGGTCTCCCCTTTCCAGGCAAAAACAGCAGCTGAGTCACGTGCAATAGCTGCGGCGGCATGATCTTGAGTGGAGAAGATATTG
CAAGAACACCAACGAACCTCAGCACCCAAGGCGGTCAAGGTTTCG