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Detailed information on CNT30266045


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676994Brassica rapaSetaria viridis30.9327.4597.08137forward
CNT30639555Brassica rapaNymphaea colorata74.4919.3293.33330forward
CNT30730610Brassica rapaCorchorus capsularis74.7231.1492.45331forward
CNT30381505Brassica rapaManihot esculenta25.7339.1889.47114forward
CNT30403504Brassica rapaBeta vulgaris14.929.8696.9766reverse complement
CNT30525072Brassica rapaPhaseolus vulgaris36.3437.795.65161reverse complement
CNT30202038Brassica rapaPisum sativum74.492990.3330reverse complement
CNT30503431Brassica rapaNicotiana attenuata74.7223.9792.15331reverse complement
CNT30711335Brassica rapaGlycine max49.8956.3891.4221reverse complement
CNT3044711Brassica rapaPrunus dulcis55.0851.1592.62244reverse complement
CNT30193801Brassica rapaSecale cereale74.4923.3798.48330forward
CNT30384181Brassica rapaTriticum turgidum71.7848.7798.43318reverse complement
CNT30588765Brassica rapaMusa acuminata75.447.8594.01334reverse complement
CNT3087623Brassica rapaVigna radiata21.6746.1590.6296reverse complement
CNT30511396Brassica rapaSolanum lycopersicum64.1131.0490.85284forward
CNT30552256Brassica rapaOryza glaberrima38.1565.2597.63169reverse complement
CNT30437708Brassica rapaAegilops tauschii24.3834.6296.3108reverse complement
CNT30257732Brassica rapaAvena sativa58.4795.2298.46259reverse complement
CNT30612440Brassica rapaArabis alpina23.746.6791.43105forward
CNT30600961Brassica rapaFraxinus excelsior24.631.7886.24109forward
CNT30141326Brassica rapaLolium perenne34.9946.6999.35155forward
CNT30715515Brassica rapaMalus domestica golden39.9588.0684.18177forward
CNT30688464Brassica rapaTriticum urartu74.4917.9398.79330forward
CNT30722943Brassica rapaTriticum spelta61.413.5198.53272forward
CNT30352524Brassica rapaEragrostis tef23.725.06100105reverse complement
CNT30357533Brassica rapaLactuca sativa25.7311.292.98114forward
CNT30369364Brassica rapaOryza glumipatula24.626.298.17109forward
CNT30483432Brassica rapaChara braunii15.3533.3391.1868forward
CNT30644907Brassica rapaCannabis sativa25.7324.3692.98114reverse complement
CNT3056240Brassica rapaAmborella trichopoda25.7339.8691.23114forward
CNT30332807Brassica rapaDioscorea rotundata74.4919.9894.85330reverse complement
CNT30102893Brassica rapaOryza rufipogon74.4923.496.97330forward
CNT30576012Brassica rapaOryza barthii26.1949.7997.41116reverse complement

Expression of CNT30266045

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MGHVESRVNQQGPPCKAKYSWVTDSEVVP*

>peptide 2 (40 aa)
MSRRLIGQLSLLMDPNLGDLSMTRMKHETKQRSEPTDVEES

Sequence

>CNT30266045
CGGGGTTGTTAGAGCAATAAAAGCTTCTTGCTGCTAGGCGAAGCGGTTGAGTGCCGCACCCTAGATGGCTAAAGTCCAGTAGCCGAAAGCATCACTAGCT
TACGCTCTGACCCGAGTAGCATGGGGCACGTGGAATCCCGTGTGAATCAGCAAGGACCACCTTGCAAGGCTAAATACTCCTGGGTGACCGATAGCGAAGT
AGTACCGTGAGGGAAAGGTGAAAAGAACCCCCAGTGGGTAGTGAAATAGAACGTGAAACCGTGCTGAGCTCCCAAGCAGTGGGAGGGGAAAGTGATCTCT
GACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCTATGACCAGGATGAAGCA
TGAAACTAAGCAGAGGTCCGAACCGACTGATGTTGAAGAATCA