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Detailed information on CNT30265852


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690840Brassica rapaOryza sativa22.22.185.5797forward
CNT30201083Brassica rapaPisum sativum23.574.8288.35103forward
CNT30182914Brassica rapaSecale cereale23.575.5885.44103forward
CNT30303870Brassica rapaTriticum aestivum23.5711.3885.44103forward
CNT30225846Brassica rapaHordeum vulgare23.579.0885.44103forward
CNT30565170Brassica rapaActinidia chinensis22.658.6789.999forward
CNT30539441Brassica rapaBrassica napus23.572.1191.26103forward
CNT30239038Brassica rapaBrassica oleracea23.578.2695.15103forward
CNT30554212Brassica rapaOryza glaberrima22.22.5785.5797forward
CNT30146680Brassica rapaMedicago truncatula23.578.2286.41103forward
CNT30443410Brassica rapaAegilops tauschii18.0829.0487.3479forward
CNT30257373Brassica rapaAvena sativa23.5715.5184.47103forward
CNT3059817Brassica rapaArabidopsis lyrata23.5717.8594.17103forward
CNT3075230Brassica rapaBrassica juncea10033.3899.08437forward
CNT302912Brassica rapaZea mays22.212.1185.5797forward
CNT30680517Brassica rapaTriticum urartu23.5717.485.44103forward
CNT30477828Brassica rapaArabidopsis halleri23.5720.2494.17103forward
CNT30355674Brassica rapaLactuca sativa20.1411.9290.9188forward
CNT30578317Brassica rapaOryza barthii22.220.0485.5797forward

Expression of CNT30265852

Peptides detected in this lncRNA

>peptide 1 (45 aa)
SKFVWLRFFHNRSRARRVGGRGTPSARARLRMDSSSSLFGGCGHT*

>peptide 2 (28 aa)
MFQSVLYKILPLFFFDQLNNSLIKKGISV

>peptide 3 (63 aa)
QNSCGYASSITEVGLDVSEEEEPLLLELALEWIPRQVCLEGVDTLNCLYFIHSIGMLPGIAGH*

Sequence

>CNT30265852
TTCAAAATTCGTGTGGTTACGCTTCTTCCATAACAGAAGTAGGGCTAGACGTGTCGGAGGAAGAGGAACCCCTTCTGCTCGAGCTCGCCTTAGAATGGAT
TCCTCGTCAAGTCTGTTTGGAGGGTGTGGACACACTTAATTGTTTGTATTTCATTCATTCCATCGGTATGCTTCCAGGCATTGCTGGTCATTGAGCCGGT
CACCGGTGGCTTCCTCACTTGTAATGTGAAGCTGTTTTCCATTTCTCATTTTTGAGGATATCAAAATTCTCTCTGGCAAATACAACTATTTTGATCATTT
CTTCGCATGTACCCGCAGTAGCATTCAAATAATGCCTTTTGATTTCACATGTTTCAGTCTGTGCTTTATAAAATATTACCTCTTTTTTTTTTTGATCAAC
TGAATAATTCATTAATTAAAAAGGGGATTAGTGTGAA