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Detailed information on CNT30265711


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639740Brassica rapaNymphaea colorata84.2763.9592.682159reverse complement
CNT30531232Brassica rapaEucalyptus grandis99.6575.3893.772553forward
CNT30550163Brassica rapaIpomoea triloba57.8873.3895.141483forward
CNT30619309Brassica rapaSesamum indicum69.280.793.181773reverse complement
CNT30283199Brassica rapaChenopodium quinoa81.376.5595.12083forward
CNT3021656Brassica rapaCitrullus lanatus99.6542.1794.162553forward
CNT30632327Brassica rapaVigna unguiculata99.6179.5593.262552forward
CNT30195048Brassica rapaPisum sativum99.867.9993.312557forward
CNT30508033Brassica rapaNicotiana attenuata99.6976.791.932554forward
CNT30711135Brassica rapaGlycine max97.7478.8293.532504forward
CNT3047214Brassica rapaPrunus dulcis82.7967.4292.932121forward
CNT3060563Brassica rapaArabidopsis lyrata62.1872.7197.431593reverse complement
CNT3076930Brassica rapaBrassica juncea99.4574.1699.762548forward
CNT3023562Brassica rapaPopulus trichocarpa62.1871.3794.851593reverse complement
CNT3035495Brassica rapaCucumis melo99.6948.4994.092554forward
CNT30583181Brassica rapaEchinochloa crusgalli81.7389.3391.982094forward

Expression of CNT30265711

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MNGLTRFPLSLSTIQRNHSQGNGLGRISGERRPC*

>peptide 2 (31 aa)
MGAGDASWSDAERSNPVRRSIRGVDRRGLRW*

>peptide 3 (53 aa)
MRELRKGIRLKFRNRDVAVDGNVRESGDVGGNSGKSYLFCLTACPPWKRLSRR*

>peptide 4 (32 aa)
REGESPVVPGPCRTTRRCLRVGLFGNAAPIGR*

>peptide 5 (32 aa)
MCASQRVSKPVRRKEADWLDPSRVHSRPTLIF*

>peptide 6 (55 aa)
MPRHLISDAHEWINEIPTVPVYYPAKPQPRERAWQNQRGKKTLLSLTLVRLCEMT*

>peptide 7 (66 aa)
EERVRAPSCPDPVAPRGAVYESGCLGMQPQSGGKFRPRLNMGERPIANKYREVKMKRTLKRESKSA*

>peptide 8 (43 aa)
MEQCRQGKSAKWIRNFGKRIGSEGWARGSQFRTRRLLAGCLSC*

>peptide 9 (40 aa)
MNRKPGYGAQLRANLEPTKGVGRLRQQDGGHGSRNPLRSV*

Sequence

>CNT30265711
GAAGAGAGGGTGAGAGCCCCGTCGTGCCCGGACCCTGTCGCACCACGAGGCGCTGTCTACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTA
AATTCCGTCCAAGGCTAAATATGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGTAAAGATGAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTG
AAATTGTCGGGAGGGAAGCGGATGGGGGCCGGCGATGCGTCCTGGTCGGATGCGGAACGGAGCAATCCGGTCCGCCGATCGATTCGGGGCGTGGACCGAC
GCGGATTAAGGTGGTGACCTAAGCCCGGGCTTTTGTTACGCCCGTGGAGACGTCGCTGCCTTAATCGTGGTCTGCAGCACGCGCCTCACGGCGTGCCTCG
GCATCTGCGTGCTCAGGGCGTCGGCCTGTGGGCTCCCCATTCGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGAGT
AAACCCGTAAGGCGCAAGGAAGCTGATTGGCTGGATCCCTCACGGGTGCACAGCCGACCGACCTTGATTTTCTGAGAAGGGTTCGAGTGTGAGCATGCCT
GTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGATACTGACGTGCAAATCGTTCGTCT
GACTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCTCGGAAACGAGTTCTATCG
GGTAAAGCCAATGATTAGAGGCATCGGGGACGCAATGTCCTCGACCTATTCTCAAACTTTAAATAGGTAGGACGGGGTGGCTGCTTTGTTGAGCCATCCC
ACGGAATCGAGAGCTCCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGGAAGCCGGGTTACGGTGCCCAACTGCGCGCTAACCT
AGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAAC
TAGCCCCGAAAATGGATGGCGCTGAAGCGCGCGACCTATACCCGGCCGTCGGGGCAAGAGCCAGGCCTCGATGAGTAGGAGGGCGCGGCGGTCGCTGCAA
AACCTAGGGCGCGAGCCCGGGCGGAGCGGCCGTCGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGGCCGAAGAGGGGAAAGG
TTCCATGTGAACGGCACTTGCACATGGGTTAGTCGATCCTAAGAGTCGGGGGAAACCCGTCTGATAGCGCTTATGCGCGAACTTCGAAAGGGGATCCGGT
TAAAATTCCGGAACCGGGACGTGGCGGTTGACGGCAACGTTAGGGAGTCCGGAGACGTCGGCGGGAATTCCGGAAAGAGTTATCTTTTCTGTTTAACAGC
CTGCCCACCCTGGAAACGGCTCAGCCGGAGGTAGGGTCCAGCGGCTGGAAGAGCACCGCACGTCGCGTGGTGTCCGGTGCATTCCCGGCGGCCCTTGAAA
ATCCGGAGGACCGAGTGCCGCTCACGCCCGGTCGTACTCATAACCGCATCAGGTCTCCAAGGTGAACAGCCTCTGGTCGATGGAACAATGTAGGCAAGGG
AAGTCGGCAAAATGGATCCGTAACTTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCTCGGGGGTCCCAGTTCCGAACCCGTCGACTGTTGGCGGGCTGCT
TGAGCTGCTAACGTGGCGAGAGCGGACCGCCTCGTGTCGGCCGGGGGACGGACTGGGAACGGCTCTTTCGGGAGCTTTCCCCGGGCGTCGAACAGCCAAC
TCAGAACTGGTACGGACAAGGGGAATCCGACTGTTTAATTAAAACAAAGCATTGCGATGGTCCCTGCGGATGCTAACGCAATGTGATTTCTGCCCAGTGC
TCTGAATGTCAAAGTGAAGAAATTCAACCAAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTG
ACGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCAGAATCAGCGGGGAAAGAA
GACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGAATAAGTGGGAGCTCCGGCGCAAGTGAAATACCACTACTTTTAAC
GTTATTTTACTTACTCCGTGAATCGGAGGCGGGGTAACAACCCCTTCTTTTAGACCCAAGACTCGCTTTGGCGGGTCGATCCGGGCGGAGGACATTGTCA
GGTGGGGAGTTTGGCTGGGGCGGCACATCTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGT
AAAAGCTCGTTTGATTCTGATTTTCAGTACGAATACGAACCGTGAAAGCGAGAGAGTTTGGC