Detailed information on CNT30265330


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3059801Brassica rapaArabidopsis lyrata48.5927.7590.08121forward
CNT30478704Brassica rapaArabidopsis halleri48.5932.3588.43121forward

Expression of CNT30265330

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MTAFSSPVGGSSTNFPLSPRAPIAPNRVNNMKKRSNGSASW*

>peptide 2 (35 aa)
MVEQHESFPRGRNGELWAEREGSCSLRIGSQKLPK*

>peptide 3 (35 aa)
NDGFLKSGGRIVDEFSSVPKSSDSTQQSEQYEEEK*

Sequence

>CNT30265330
GAATGACGGCTTTCTCAAGTCCGGTGGGAGGATCGTCGACGAATTTTCCTCTGTCCCCAAGAGCTCCGATAGCACCCAACAGAGTGAACAATATGAAGAA
GAGAAGTAATGGTTCTGCTTCATGGTAGAACAACATGAGAGTTTCCCGAGAGGAAGAAATGGTGAACTTTGGGCTGAGCGAGAGGGTTCTTGTTCCTTAA
GAATTGGTTCGCAGAAACTCCCGAAGTAAGCAGCATGGTTTGAGCCATT