Detailed information on CNT30265127


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30698284Brassica rapaQuercus lobata56.4750.3586.11144forward
CNT30377782Brassica rapaArabidopsis thaliana60.7815.3594.84155forward
CNT3020462Brassica rapaCitrullus lanatus59.6113.5786.18152forward
CNT30525464Brassica rapaPhaseolus vulgaris103.9246.982.64265forward
CNT30503993Brassica rapaNicotiana attenuata52.5548.7388.81134forward
CNT30121467Brassica rapaPhyscomitrium patens56.0821.5786.01143forward
CNT30562820Brassica rapaActinidia chinensis56.8630.5387.59145forward
CNT30509820Brassica rapaSolanum lycopersicum24.3127.6896.7762forward
CNT3076676Brassica rapaBrassica juncea60.7813.6194.19155forward
CNT3010836Brassica rapaZea mays60.7846.5584.52155forward
CNT30427061Brassica rapaPapaver somniferum58.4321.8285.23149forward
CNT30148140Brassica rapaBrachypodium distachyon60.7840.7987.74155forward
CNT3050411Brassica rapaCucumis sativus98.8269.2380.56252forward

Expression of CNT30265127

Peptides detected in this lncRNA

>peptide 1 (29 aa)
QHHHSSKTWAPSRSPYQIACQSWSRSQRT*

>peptide 2 (53 aa)
SITILQKLGLLLDLLTRSPVNLGQDLRELDCNVGRVAIEDWGVSVTDLTRVLP*

>peptide 3 (48 aa)
PASPFFKNLGSFSISLPDRLSILVKISENLTAMWDVWQSRTGAYPLPI*

Sequence

>CNT30265127
CCAGCATCACCATTCTTCAAAAACTTGGGCTCCTTCTCGATCTCCTTACCAGATCGCCTGTCAATCTTGGTCAAGATCTCAGAGAACTTGACTGCAATGT
GGGACGTGTGGCAATCGAGGACTGGGGCGTATCCGTTACCGATCTGACCAGGGTGCTCCCTTAGCTGGGTCATCCTTGGAGTTAGATGCAACATACCCAC
GCTTAAGATCCTTCACAGCAACATTCTTAACATTGAACCCAACGTTGTCACCTGG