Detailed information on CNT30264951


BLAST search results

BLAST vs Swiss-Prot:
sp|O50008|METE1_ARATH, E-value = 5e-58

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30377828Brassica rapaArabidopsis thaliana41.074094.2138forward
CNT30404182Brassica rapaBeta vulgaris62.240.1282.78209forward
CNT30491477Brassica rapaOlea europaea43.4546.7980.82146forward
CNT30711924Brassica rapaGlycine max63.9939.1686.05215forward
CNT30312681Brassica rapaCamelina sativa88.3998.0293.94297forward
CNT30129110Brassica rapaCorymbia citriodora66.0757.2282.43222forward
CNT30478263Brassica rapaArabidopsis halleri41.9640.7594.33141forward
CNT30619828Brassica rapaCajanus cajan56.8552.7681.15191forward
CNT3027096Brassica rapaPopulus trichocarpa62.260.0684.69209forward
CNT30118059Brassica rapaOryza nivara18.7521.588.8963forward
CNT30333329Brassica rapaCynara cardunculus27.6819.2182.893forward
CNT3049510Brassica rapaCucumis sativus68.4556.9388.26230forward

Expression of CNT30264951

Peptides detected in this lncRNA

>peptide 1 (59 aa)
LKCLQGAEGRSKVVGPDVPSINNTSEEVLSLGETSLDQIKGLGATNQVKSKGSHTLQRS*

>peptide 2 (71 aa)
SSASKVLRDAAKSLAQMFLPSTTPAKRYFPSGKPALTKSRVLVPRTKSNPKAVTPFNEVRVLYASAGISAK*

>peptide 3 (29 aa)
MLQQGYQRSRSQQEHSNQKELIQVQHKPR*

Sequence

>CNT30264951
CTCAAGTGCCTCCAAGGTGCTGAGGGACGCAGCAAAGTCGTTGGCCCAGATGTTCCTTCCATCAACAACACCAGCGAAGAGGTACTTTCCCTCGGGGAAA
CCAGCCTTGACCAAATCAAGGGTCTTGGTGCCACGAACCAAGTCAAATCCAAAGGCAGTCACACCCTTCAACGAAGTTAGGGTCTTGTATGCTTCAGCAG
GGATATCAGCGAAGTAGGTCTCAACAAGAACATTCAAACCAGAAAGAGTTGATTCAAGTTCAGCATAAGCCCCGGTGAAGGCCTGGAGTTTGTGGCACCA
GCTGCCTTAAGCTCAGTGATCACTTCCCTGTAGACA