Detailed information on CNT30264857


BLAST search results

BLAST vs Swiss-Prot:
sp|O50008|METE1_ARATH, E-value = 4e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224666Brassica rapaHordeum vulgare30.2340.9982.4291forward
CNT30555770Brassica rapaOryza glaberrima20.616.4587.162forward
CNT30597166Brassica rapaOryza meridionalis20.621.9987.162forward
CNT30105511Brassica rapaOryza longistaminata20.624.887.162forward
CNT30104583Brassica rapaOryza rufipogon20.629.2588.7162forward
CNT30578474Brassica rapaOryza barthii20.63187.162forward
CNT30604899Brassica rapaOryza punctata20.626.6187.162forward

Expression of CNT30264857

Peptides detected in this lncRNA

>peptide 1 (59 aa)
LKCLQGAEGRSKVVGPDVPSINNTSEEVLSLGETSLDQIKGLGATNQVKSKGSHTLQRS*

>peptide 2 (77 aa)
PSSASKVLRDAAKSLAQMFLPSTTPAKRYFPSGKPALTKSRVLVPRTKSNPKAVTPFNEVRVSTRTFKPERVDSSSA*

Sequence

>CNT30264857
CCCTCAAGTGCCTCCAAGGTGCTGAGGGACGCAGCAAAGTCGTTGGCCCAGATGTTCCTTCCATCAACAACACCAGCGAAGAGGTACTTTCCCTCGGGGA
AACCAGCCTTGACCAAATCAAGGGTCTTGGTGCCACGAACCAAGTCAAATCCAAAGGCAGTCACACCCTTCAACGAAGTTAGGGTCTCAACAAGAACATT
CAAACCAGAAAGAGTTGATTCAAGTTCAGCATAAGCCCCGGTGAAGGCCTGGAGTTTGTGGCCCTCAAGATCCATGACAAGGACAGGCTCGTCAAGCTGA
A