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Detailed information on CNT30264722


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641251Brassica rapaNymphaea colorata84.450.4883.54893forward
CNT30376918Brassica rapaArabidopsis thaliana64.8495.9487.03686forward
CNT30727322Brassica rapaCorchorus capsularis86.2971.8382.91913forward
CNT30526024Brassica rapaPhaseolus vulgaris87.0569.6183.6921forward
CNT30630785Brassica rapaVigna unguiculata62.1977.1484.95658forward
CNT30201346Brassica rapaPisum sativum59.2660.7685.81627forward
CNT30710308Brassica rapaGlycine max64.6574.0387.57684forward
CNT3044330Brassica rapaPrunus dulcis85.6374.0883.89906forward
CNT30169882Brassica rapaPistacia vera82.9942.5684.05878forward
CNT30636126Brassica rapaCapsicum annuum87.1549.9783.62922forward
CNT3094992Brassica rapaSolanum tuberosum86.9679.0483.8920forward
CNT3089455Brassica rapaVigna radiata83.2772.4583.88881forward
CNT30171101Brassica rapaTrifolium pratense87.1555.4483.08922forward
CNT3077383Brassica rapaBrassica juncea89.9873.4697.58952forward
CNT30217449Brassica rapaKalanchoe fedtschenkoi86.1160.3783.97911forward
CNT30652285Brassica rapaRosa chinensis86.3975.184.03914forward
CNT30623426Brassica rapaDaucus carota86.1150.5584.41911forward
CNT30359535Brassica rapaLactuca sativa83.9352.5883.45888forward
CNT30643414Brassica rapaCannabis sativa80.7281.1883.72854forward
CNT3032244Brassica rapaTheobroma cacao86.2979.4682.69913forward
CNT30321313Brassica rapaAsparagus officinalis82.2366.3683.22870forward
CNT30174705Brassica rapaVigna angularis87.0559.5383.93921forward
CNT30111644Brassica rapaFicus carica83.9362.3282.88888forward
CNT3051129Brassica rapaCucumis sativus80.4396.1683.78851forward
CNT30114931Brassica rapaEutrema salsugineum85.9281.9786.8909forward

Expression of CNT30264722

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MKGRLLLDVVVSESTSILELLPGEDKPLLIRWDSLLVLNLGLDVVDGVGAFHLKGDGLSCESLNEDLHLLFTIAKDQY

>peptide 2 (53 aa)
MPSLSWILALTLSMVSELSTSRVMVLPVRVLTKICIPPRRRKTKWRVDSFWIL*

>peptide 3 (52 aa)
MRRCWSGGIPSLSWILALTLSMVSELSTSSVMVFPVRVFTKICMPPRRRNTK*

>peptide 4 (37 aa)
QNSKFHRIYNVTKHLRIESTWKHSNGLKRDRKQRTKT*

>peptide 5 (31 aa)
MVSELSTSSVIVFPVRVLTKICIPPRSLRTR*

>peptide 6 (53 aa)
MKSRLLLNVVVSQGTTILELLAGKDQPLLVWRNAFLVLDLSLNVVNGVGTLHL*

Sequence

>CNT30264722
CAAAACAGCAAGTTTCACCGCATCTACAACGTAACCAAACATTTAAGAATAGAGTCGACATGGAAACATTCGAATGGTCTTAAAAGAGATAGGAAACAGA
GGACAAAGACTTAAAAGCCACCACGGAGACGCAACACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGACCATCCTCAAGCTG
CTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATCCCTTCCTTGTCTTGGATTTTGGCCTTGACGTTATCAATGGTGTCCGAGCTCTCCACCTCA
AGTGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCATGCCACCACGCAGACGTAACACCAAATGAAGAGTCGACTCCTTCTGAATGTTGTAGT
CAGCCAAGGTACGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTAACGTT
GTCAATGGTGTCGGAACTCTCCACCTCTAGAGTAATGGTCTTACCGGTAAGAGTCTTGACAAAGATCTGCATACCTCCACGCAGACGCAAGACCAAGTGG
AGAGTAGACTCCTTCTGGATATTGTAATCAGCGAGGGTTCTGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCGGGAGGAATACCCT
CCTTGTCTTGGATCTTAGCTTTAACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGCGTGATCGTCTTTCCGGTGAGAGTCTTAACAAAGATCTGCAT
ACCTCCACGGAGCCTGAGGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCGAGAGTACGTCCATCCTCGAGTTGCTTCCCGGCGAAGATA
AGCCTTTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATGGTCTTTC
CTGTGAGAGTCTTAACGAAGATCTGCATCTGTTATTCACAATAGCCAAAGATCAATAC