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Detailed information on CNT30264705


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30371574Brassica rapaArabidopsis thaliana29.848.3690.8250forward
CNT30618119Brassica rapaSesamum indicum20.0232.7580.36168forward
CNT3019440Brassica rapaCitrullus lanatus28.4963.0680.33239forward
CNT30525128Brassica rapaPhaseolus vulgaris30.5159.478.91256forward
CNT30629005Brassica rapaVigna unguiculata15.1421.7881.89127forward
CNT30709011Brassica rapaGlycine max30.5128.1980.47256forward
CNT3091235Brassica rapaSolanum tuberosum23.2416.2881.03195forward
CNT30298665Brassica rapaTriticum aestivum16.3321.1781.02137forward
CNT3086026Brassica rapaVigna radiata30.0434.9579.37252forward
CNT30540068Brassica rapaBrassica napus87.6100100735forward
CNT30664762Brassica rapaTriticum dicoccoides16.3323.181.02137forward
CNT30313614Brassica rapaCamelina sativa29.864.4390250forward
CNT30611125Brassica rapaArabis alpina21.5720.886.19181forward
CNT308929Brassica rapaZea mays16.3345.5181.02137forward
CNT30609169Brassica rapaGossypium raimondii12.2824.4183.5103forward
CNT30684883Brassica rapaTriticum urartu16.3322.7681.02137forward
CNT30480106Brassica rapaArabidopsis halleri9.5435.8793.7580forward
CNT30620828Brassica rapaCajanus cajan13.9553.4282.05117forward
CNT3038681Brassica rapaCucumis melo10.6122.1984.2789forward
CNT30174403Brassica rapaVigna angularis19.3123.3180.86162forward
CNT3040196Brassica rapaMarchantia polymorpha7.7522.8187.6965forward

Expression of CNT30264705

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MEERATAAEKAFMDCCCVADLSSEQTNLAVDLGKD*

>peptide 2 (31 aa)
MKPRKMRRLANGTSMMISFIAGFFSSLIAIK*

Sequence

>CNT30264705
TACTACTTTTAGGTTCTTCTCATTTCCAATGTAGGATTCTCAGCATTTAACATTTAATCCAAATTACAAGTTTTCCATAATGCAAAGATATTCTTTGAAA
GGAAGAGTTAATTAGAGATATCAATACATACACTGGAAAACATGAGATAGAGAGAAAGAGAGAGAAGCAAACCAAAACAACAAATATAGATTTGTTTTTG
TTTTTCTAGACATCCTTGGCAATGAGATCGCCATTGAGTAACGCTCTGTAAGCAGCAACAGGCCAAATGAAACCACGGAAGATGAGGCGACTAGCCAATG
GAACATCAATGATGATCTCTTTCATTGCTGGTTTCTTCTCATCGCTGATTGCTATCAAGTAGCTTCGTCCAACCCACCCGATCCATCCAGCAATGTAAAG
GAAGAGAAGGCCTGGAGTTATGAACTCTCCCCAATGCCGCTGGTCTCCGTTCACTATCAGGAGCGTAGAGCTTAAGAGATGATTGAAGCTTCTTGATCTG
TTGCTTCTCCCTCTTGGCGAACTGTTTCGACTCCTTGCAAGGTGTCAACCCCGAGATATCAGCGACGGCTGGCATCGGAGCTGATAGGAGGATGGAAGAG
AGAGCGACTGCGGCGGAGAAAGCCTTCATGGACTGTTGCTGCGTCGCGGATTTGTCATCGGAGCAAACGAATCTCGCGGTGGATTTAGGCAAGGATTGAG
TGAGAGATTTGTTGGATCTCGGGTTGAGAACGAGGTTCGTCGGGATCGTGAGCGACATGGCTACTCGCGTTTTGGAACTCGTTGGAGGGAAGGAAGTGTG
GAGGAGGAGTACAGAGGAGCTAAGAGATGAGCTTTAGAT