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Detailed information on CNT3026462


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 7e-160

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-155

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3069547Populus trichocarpaQuercus suber76.2710084.23691forward
CNT30381201Populus trichocarpaManihot esculenta75.9472.8885.47688forward
CNT30510145Populus trichocarpaSolanum lycopersicum76.2748.5384.8691forward
CNT30612915Populus trichocarpaArabis alpina76.1670.8483.48690forward
CNT30425713Populus trichocarpaPapaver somniferum75.1766.6383.7681forward
CNT30327242Populus trichocarpaAsparagus officinalis75.568.7485.09684forward

Expression of CNT3026462

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSELSTSRVMVFPVKVFTKICIPPRRRSTK*

>peptide 2 (53 aa)
FKDNQEYLCSKDVKFILENQRQVSHFFKPDMENNSKTAKRTWYFSNFIYSIQQ*

>peptide 3 (61 aa)
MSLCWSGGMPSLSWILALTLSMVSELSTSKVMVFPVKVLTKICIPPLSRSTKWRVDSFWML*

Sequence

>CNT3026462
ATTCAAAGACAATCAGGAATATCTTTGTTCAAAAGATGTGAAATTTATTTTAGAGAATCAAAGACAAGTTTCCCACTTCTTTAAACCAGACATGGAAAAC
AATAGCAAAACAGCAAAACGTACATGGTATTTCAGCAACTTCATATATTCCATCCAACAATAGCCGGTTACACCAACTGGGACACAAACACCTGACCATA
GAGGATCATCACCAGCTTAGAAACCACCGCGGAGACGAAGCACAAGGTGTAGAGTGGACTCCTTCTGTATGTTGTAATCTGCCAGGGTCCTTCCATCTTC
AAGCTGCTTTCCAGCGAAGATCAACCTTTGCTGGTCAGGTGGGATCCCCTCCTTATCTTGGATTTTGGCCTTCACATTGTCAATGGTGTCCGAGCTCTCA
ACTTCCAGGGTGATGGTCTTCCCAGTCAAAGTCTTCACAAAAATTTGCATACCACCACGAAGGCGGAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGT
TGTAGTCAGCTAGAGTACGTCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGCCTCTGTTGGTCTGGAGGGATGCCCTCCTTATCCTGGATTTTGGCCTT
GACATTATCAATGGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTCTTCCCAGTCAAAGTCTTGACAAAGATCTGCATACCACCTCTAAGTCGAAGCACC
AAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGTGTGCGTCCATCCTCTAGTTGCTTCCCAGCAAAGATCAACCTTTGCTGATCTGGGGGAA
TCCCTTCCTTGTCCTGGATCTTAGCTTTTACATTGTCGATTGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGAGTTTTCACAAAAAT
CTGCAT