Detailed information on CNT3026451


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 9e-160

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-143

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30377699Populus trichocarpaArabidopsis thaliana74.4680.383.94685forward
CNT30727227Populus trichocarpaCorchorus capsularis72.8358.3186.27670forward
CNT3045767Populus trichocarpaPrunus dulcis75.1147.0786.54691forward
CNT30214147Populus trichocarpaHelianthus annuus73.9184.5884.26680forward
CNT30153579Populus trichocarpaPrunus persica75.1143.6285.09691forward

Expression of CNT3026451

Peptides detected in this lncRNA

>peptide 1 (94 aa)
MKGGLLLDVVISESAPILKLLASKDEPLLVWRDALFILDFSLDIINGVGALHLQGDGLPSQSLDKDLHTTSKSKHQVEGGLLLDVVVSECASIL*

>peptide 2 (30 aa)
FGEIQRQSGISLFKRCEIYFRESKTSFPLL*

>peptide 3 (31 aa)
MVSELSTSRVIVFPVRVLTKICIPPRRRSTK*

>peptide 4 (57 aa)
YLVKFKDNQEYLCSKDVKFILENQRQVSHFFKPDMENNSKTAKRTWYFSNFIYSIQQ*

>peptide 5 (61 aa)
MSLCWSGGMPSLSWILALTLSMVSELSTSKVMVFPVKVLTKICIPPLSRSTKWRVDSFWML*

Sequence

>CNT3026451
TATTTGGTGAAATTCAAAGACAATCAGGAATATCTTTGTTCAAAAGATGTGAAATTTATTTTAGAGAATCAAAGACAAGTTTCCCACTTCTTTAAACCAG
ACATGGAAAACAATAGCAAAACAGCAAAACGTACATGGTATTTCAGCAACTTCATATATTCCATCCAACAATAGCCGGTTACACCAACTGGGACACAAAC
ACCTGACCATAGAGGATCATCACCAGCTTAGAAACCACCGCGGAGACGAAGCACAAGGTGTAGAGTGGACTCCTTCTGTATGTTGTAATCTGCCAGGGTC
CTTCCATCTTCAAGCTGCTTCCCAGCAAAGATCAGTCTCTGCTGGTCTGGTGGGATCCCCTCCTTATCTTGGATTTTGGCCTTCACATTGTCAATGGTGT
CCGAGCTCTCAACTTCCAGGGTTATAGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCATACCACCACGGAGGCGAAGCACCAAATGAAGGGTGGACTC
CTTCTGGATGTTGTAATCAGCGAGAGTGCGCCCATCCTCAAGTTGCTTGCCAGCAAAGATGAGCCTCTGTTGGTCTGGAGGGATGCCCTCTTTATCTTGG
ATTTTAGCCTTGACATTATCAATGGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTCTTCCCAGTCAAAGTCTTGACAAAGATCTGCATACCACCTCTAA
GTCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGTGTGCGTCCATCCTCTAGTTGCTTCCCAGCAAAGATCAACCTTTGCTG
ATCTGGGGGAATCCCTTCCTTGTCCTGGATCTTAGCTTTTACATTGTCGATTGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGAGTT
TTCACAAAAATCTGCATCTG