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Detailed information on CNT30264184


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF89|CB5_ARATH, E-value = 3e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317123Brassica rapaCorylus avellana13.8757.2886.44118forward
CNT3077810Brassica rapaBrassica juncea47.4764.8597.52404forward

Expression of CNT30264184

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MGLLGEACLRSPAQVFCISKFQSFHTCGIAKI*

>peptide 2 (34 aa)
MTVSKLFPKGSLRCFERFSTGSLASPKGSNGPPG*

>peptide 3 (63 aa)
MYQAVGDSVVLSSTKENNLSNYSENKVDWDVLAKVAQCVSIKKKSTSLHRDIPIGSHHIFFLG*

Sequence

>CNT30264184
TGACACTTACAAACAACTAGAGTACATAATATAAATTATTTTCGTAACAGAAAATGGTGACAGTTTAGGATAGAATTTATCTGTAATAATATAATCACTA
AAAATCAAAATAAAACCGAATGATGAAATATGTATATGACTAAACGCAAACGCACCATCAGATGGTTATCCTTAGAAGCAATAATTAAGTAACATTGGAA
TATATCAAGAAGATGCAGATGGAAGTTTTTTTCACAATGTCAACAGAAACTCTCATCAAACAAAGTGTACAAAGCATCTTCGAAGCTCCTTAAAATGAGA
AATGTCTTAGAGAGTGGGAGCTCTCTCAGCAGTACCAGCGATGACGGTAAGCAAATTGTTTCCGAAAGGATCACTTAGATGTTTTGAAAGGTTCTCAACA
GGGTCTTTAGCAAGTCCCAAAGGGTCGAATGGGCCTCCTGGGTGAAGCTTGTCTTCGAAGTCCTGCCCAAGTTTTTTGCATTTCAAAATTTCAGTCTTTT
CACACATGCGGAATAGCAAAAATCTAAAGAAATGTACCAAGCCGTTGGTGATTCGGTAGTACTCAGCTCCACCAAGGAGAACAACCTCAGCAACTACAGC
GAGAACAAGGTTGATTGGGATGTTCTTGCCAAAGTAGCTCAATGTGTTTCCATCAAGAAGAAGAGCACCAGTCTGCATAGAGATATTCCAATAGGATCCC
ATCACATATTCTTCCTTGGGTAGATATATAGAATGTAAGTAAACAGAAGTAGCCAAAACAAACCTTAAACCAGACGGCTTCAGGGATGATGCAACCAGCT
GCTCCCAACATAGCCCATCTCGCGTGAATCAGTTCAAAGGCTTGGTATCTG