CANTATAdb - search

Detailed information on CNT30264067

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30285386	Brassica rapa	Triticum aestivum	7.83	22.7	90.62	64	reverse complement
CNT3082300	Brassica rapa	Brassica juncea	98.78	40.17	93.56	807	forward
CNT30612419	Brassica rapa	Arabis alpina	16.65	64.15	85.29	136	forward
CNT30480070	Brassica rapa	Arabidopsis halleri	12.73	26.07	86.54	104	forward

Expression of CNT30264067

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MLWPHSHAIANHFPIGHPSFHYSSSSTLNSRVLSGCVPEKVSQLW*

>peptide 2 (56 aa)
MGHPRPLSRPVSPIPSDGRSVNFPKARNHCLLTLQSPPDLSPCFGLTRTLSRITSR*

>peptide 3 (98 aa)
CSCNAPTCPRLMGHPRPLSRPVDPIPSDGRSVNFFKGSKSLFTDPAITTRPFPMLWPHSHAIANHFPIGHPSFHYSSSSTLNSGVLSGCVPEKVSQLW*

Sequence

>CNT30264067
GATGTTCCTGTAACGCCCCGACCTGCCCACGGCTAATGGGCCACCCACGCCCGCTCTCTCGGCCCGTGGACCCCATCCCGTCTGACGGTCGGTCCGTTAA
TTTTTTCAAAGGCTCGAAATCATTGTTTACTGACCCTGCAATCACCACCCGACCTTTTCCCATGCTTTGGCCTCACTCGCACGCTATCGCGAATCACTTC
CCGATAGGTCACCCATCCTTCCACTACTCCAGCTCAAGCACGCTTAACTCTGGAGTTCTTTCAGGATGTGTTCCGGAAAAGGTAAGTCAACTTTGGTGAC
ATAGGTAGCCAAATCAATTCTCTTAAGCCTTTTCACATATCACAACTCGGGATGTTACAATTCACCCCCTCTCAAAGAACGCAACGTCCTCGTTGCGCCC
CACGACAGGTCTCAAGACGCCTCTCAGATCGGAACTGAGATAGCTAGCTAGCTCTGATACCACTTGTAACGCCCCGACCCGCCCACGGCTAATGGGCCAC
CCACGCCCGCTCTCTCGGCCCGTGAGCCCCATCCCGTCTGACGGTCGGTCCGTTAATTTTCCAAAGGCTCGAAATCATTGTTTACTGACCCTGCAATCAC
CACCCGACCTTTCCCCATGCTTTGGCCTCACTCGCACGCTATCGCGAATCACTTCCCGATAGGTCACCCATCCTTCCACTACTCCAGCTCAAGCACGCTT
AACTCTAGAGTTCTTTCAGGATGTGTTCCGGAAAAGGTAAGTCAACTTTGGTGACATAGGTAGCCAAATCAATTCTCTTAAGCCTTTTCACATATCACAA
CTCGGGATGTTACAGTT