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Detailed information on CNT30263944


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6QHD9|MATK_BRACM, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378678Brassica rapaArabidopsis thaliana25.5252.4390.56625forward
CNT30616211Brassica rapaSesamum indicum7.5137.0287.5184forward
CNT3094897Brassica rapaSolanum tuberosum2.3320.5892.9857reverse complement
CNT30185941Brassica rapaSecale cereale11.5631.279.15283forward
CNT30385268Brassica rapaTriticum turgidum11.5629.3678.8283forward
CNT3089382Brassica rapaVigna radiata4.926.3295120forward
CNT30540516Brassica rapaBrassica napus6.9827.23100171forward
CNT30234706Brassica rapaBrassica oleracea13.3997.6298.48328forward
CNT30554921Brassica rapaOryza glaberrima2.920.1191.5571reverse complement
CNT30145113Brassica rapaMedicago truncatula2.8621.3492.8670forward
CNT30441777Brassica rapaAegilops tauschii4.9421.4987.6121forward
CNT3059907Brassica rapaArabidopsis lyrata1257.7694.9294forward
CNT30606924Brassica rapaGossypium raimondii8.2924.8290.64203forward
CNT3068455Brassica rapaLeersia perrieri3.5927.1689.7788forward
CNT30149760Brassica rapaBrachypodium distachyon7.2741.385.39178forward
CNT30117690Brassica rapaOryza nivara4.6535.5188.6114forward
CNT3049694Brassica rapaCucumis sativus3.6329.9796.6389forward

Expression of CNT30263944

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MKKKVKNPSPNRACIFHCTQLSLCIHRKLSFFVSL*

>peptide 2 (88 aa)
MSIVNEKTACVEKKRWIRIHIHENYIRTIKILDSKLIFFYYQNSSNCNTRIDRTEKNAKKRHLLPGNVGFEPRFLDGWGKVLVHLIHN*

>peptide 3 (29 aa)
MEFLQSLQIKQISFDNRNYWYAPDFCSNP*

Sequence

>CNT30263944
TTTGAAAAAAAAATTCAGTACTAGTTATCCAGTTACAGAAGCGACCCCATAGGCTTTCGCTTTCGCGTCTCTCTAAAATTGCAGTCATGGTAAAATCCTT
GGTTTATTTAATCATCAGGGACTCCCAAGCACACAAATTCTCTAAAACTATAAGTAGATAATTGAGAGCTTGTTATTGAACAGTATAACATGACTTATAT
AGCCATGTCAACCAATGTAAAATGGCTAAGATCCTTTTAGTTTAGATTCATAATAATTTTTTTATCGAGGAGAGAAATTATAAACGAATCTATATACATA
GAAATATAATTTCTCTATGAATATTATTTCAAAATCATATGAATATGATCCATAGTGGGTTGCCCGGGACTCGAACCCGGAACTAGTCGGATGGAGTAGA
TAATTTCCTTGTTAAAATGAAAAAAAAAGTAAAAAACCCCTCCCCAAACCGTGCTTGCATTTTTCATTGCACACAGCTTTCTCTATGTATACATAGAAAA
CTCAGTTTCTTTGTTTCCTTATAAATAGGACTGCGAATTCAATACTCAGTAAATTTCATCTTAGTCTTACTGTATGAACATTTAATAATAGAAATAAATG
ACTTTTGATAATACAAAATAATTAATTTTTTTGTTATCTCCGCATTCCGTTTACGTTCTGATAAATTTTGATTTAATTTATGGAGCCTCAGAACCCCATT
ATTCATGATTGACTAAATCATTAAGATAAAGAATATCCAAATACCAAACCCGCACTCGATATAATCTTTTAGAAGCATAATCACTTCTTGGGAAGATTAA
AGAAAGAACTTGGTCTTCCCCCGTAAGGAATTCTTCTAATAAACCCGAGCCCAACCTTTTTAAAAAAGCGCGTACAGTACTTTTGTGTTTACGAGCCAAA
GTTTTAACACAACAAAGACGAAGTATATATTTTATTCGATACAAATTCTTTTTGTTTGAAGATCCGCTGTAATAATGCGAAATATTTCTGCATATACGCA
CAAATCGGTTGAGAATATCAGAATCTGATGAATCCGTCCAGGTCGCTTTACTAATCGGATGCCCTAATACATTACAAAATTTATCTTTAGCCAACGACCC
AATAATAGAAGAAATTGGAATGTTGCTATCCAATTTTATTCTAACATTATCTATTAGAAATGAGTTTTCTAGCATTTGACTACGTACCACTAAAGGGTTT
AGTCGCAAACTTGATAGATAACCCAGAAATTCTAAATTATCTTTAGATAATTGATTTATATTAACCTTTTGCGATTGAAACCATACGGAAAAATAACATT
GCCATAAATTAACAAAATAATATTTCCATTTATTCATCAGAAGTGGCGTATCCTTTGTTGCCAGAATGTATTTTCCATGATATCGAACATAATGTAGGAA
AGGATCCTTGAGCAACCCTAAGAGCGCCGAAAAATTATTAACAAAGACTTTAAAAAAATGTTGTATTTTTCCATAGAATAAAATTCGCTCAAAAAAGACG
TCATAAGATGTCGATCGTAAATGAGAAGACTGCTTGCGTAGAAAAAAAAAGATGGATTCGTATTCACATACATGAGAATTATATAAGAACAATAAAAATC
TTGGATTCAAAATTGATTTTTTTTTACTATCAAAATTCTTCCAATTGCAATACTCGTATAGACAGAACCGAAAAAAATGCAAAGAAGAGGCATCTTTTAC
CCGGTAACGTAGGGTTTGAACCAAGATTTCTAGATGGATGGGGTAAGGTATTAGTACATCTAATACATAATTAAAATGTGAGAGTTTGTCTTCTAAAAAG
GGAAATATTGAATGAAGTGATTGTAAATTGTAAGATTTTTTTACATTTTTTCCTTCGATAGAGGATCCCAACCTTAGGGAAAATGGAATTTCTACAATCA
CTGCAAATAAAACAGATATCATTTGATAATAGAAATTATTGGTATGCCCCAGATTTTTGTTCAAATCCTTAGTGGGAATAATCAAACGATTCTGTTCGTA
CATTCGCAAAATTAAGCGTTTCACAATTAGTGAACTATATTTTTTGTCATAATCCGCATTTTCCAAGAAAATAGGGCGGTTTCTATTTAATCTATTTAAA
CCGTGATCATAAGCAAGTACATAAATATAGTCCCGAAAAAAAAGTGGATATAGAAAACTCTGTTGACGAGCCCCATCGAACTCTAAATATCCTTGAAATT
TCTCCATTTGGATTAAAATTCGATTTGAACTAAAAGTAAAGTCTTTATTTTCTTGAGTTCTGAAATGACACATAGTGCGATACAGTCAAAATAAGGTATT
AGATTACGAAAGCACTAAATACCTCATAAACAGGTAGACTGCTAACTGGATTCTCTATCTTTAATAGGTTTCTGTTCGTTATATTATAAAATAACAAAAC
AAGATGATTAGAAATCCTTTATTTTTTTAACCTAATCGCTTTATTTATT