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Detailed information on CNT3026393


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 8e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30196843Populus trichocarpaPisum sativum23.0419.1283.5291forward
CNT30120451Populus trichocarpaCitrus clementina21.5220.1987.0685forward

Expression of CNT3026393

Peptides detected in this lncRNA

>peptide 1 (39 aa)
RKQKQSRILIFKNPIKKGKATIFLPEPRYNLNKATLTDS*

Sequence

>CNT3026393
CAGAAAGCAAAAACAAAGTAGAATATTGATCTTCAAAAACCCAATAAAAAAAGGAAAAGCAACGATCTTTTTGCCAGAGCCCAGGTACAATTTGAACAAA
GCAACCCTAACAGATAGCTAGGGACTCATCAAATCTTGAAACCTAGACACCCTTCGGCTTGGAGCTCAATCAGCACCTGAGATGCCTCAGTGCATCCAAA
CATGGGTAGTTTCCACATAGTCCAGTAGCGTCCATCATAGTACCCTGGGGACTGGTGGTGCTCGCGGTAGACCCAACCTTTCTGCATAATCAAACATTTT
CAAGTTAGTGTCTATAAACAATTAATCACAAACCTTATATGTGACTATATATTGAGGAACTAAGAATCTGCTTGAATGCTTAATTAAGTTACCTG