Detailed information on CNT30263812


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 3e-135

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674978Brassica rapaSetaria viridis25.2923.1284.3172forward
CNT3019595Brassica rapaCitrullus lanatus55.7468.2981.27379forward
CNT30728649Brassica rapaCorchorus capsularis20.4412.7687.77139forward
CNT30224139Brassica rapaHordeum vulgare37.7984.5487.55257forward
CNT30479087Brassica rapaArabidopsis halleri27.2163.5788.11185forward

Expression of CNT30263812

Peptides detected in this lncRNA

>peptide 1 (35 aa)
FLLTRNKVGTHDSDFHTSGHLTREYTTKSKESSLV*

>peptide 2 (66 aa)
MTRFIKGLPIRSFSSDFIWTPSFCNIGLPISSFSSDFIWTPSFCNIGHNLSFWSFMQVAMICLMGS*

>peptide 3 (43 aa)
FFSPGTKLGPMILTFIPVDTLPENTRPKAKNLPLSEAGIILET*

Sequence

>CNT30263812
CTTTCTTCTCACCAGGAACAAAGTTGGGACCCATGATTCTGACTTTCATACCAGTGGACACCTTACCAGAGAATACACGACCAAAAGCAAAGAATCTTCC
CTTGTCTGAAGCGGGAATCATCTTAGAAACATAGAGCATGAGCGGACCATTAGGATCACAGTTTCTGATGGCAGTGGCATACTGATCATCGAGAGGACCT
TCATATAAATTCTCAACACGGTACCTCTGTGCAGTGTGGGGGGATGGAAGGTGAAAGATCATCATCTCAAGCAATGCAGTGCTGGCAGGGAGCCAAGTCT
GCATGACACGCTTCATCAAAGGTTTACCCATAAGGTCCTTCTCATCAGACTTCATCTGGACACCAAGCTTCTGCAACATAGGTTTACCCATAAGCTCCTT
CTCATCAGACTTCATCTGGACACCAAGCTTCTGCAACATAGGCCACAACTTATCCTTCTGGTCGTTCATGCAAGTGGCGATGATCTGCTTGATGGGTTCA
TAACAGAACTGCACAAACCCACGCTTGCAGGTAGCGGACCCAGTGTTCTTGCTGCTCCATTTCCTGGTGGCAGGGTCAAAGAAGTTCTCACCCCACAGCC
TCTCCATCATCTTAGTCTCGTCAACACCGAACTTGGAAGCATACATCTTGGCAAAGTTGGTCAGGGTGAAAGCCCATCCG