CANTATAdb - search

Detailed information on CNT30263748

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 4e-93

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30547471	Brassica rapa	Ipomoea triloba	38.38	51.57	82.8	279	forward
CNT30361828	Brassica rapa	Sorghum bicolor	55.43	77.8	82.88	403	forward
CNT3054398	Brassica rapa	Amborella trichopoda	34.53	36.59	82.87	251	forward
CNT30119815	Brassica rapa	Citrus clementina	42.64	67.54	83.55	310	forward

Expression of CNT30263748

Peptides detected in this lncRNA

>peptide 1 (31 aa)
LTFIPVDTLPENTRPKAKNLPLSEAGIILET*

>peptide 2 (46 aa)
MTRFIKGLPISSFSSDFIWTPSFCNIGHNLSFWSFMQVAMICLMGS*

Sequence

>CNT30263748
CTGACTTTCATACCAGTGGACACCTTACCAGAGAATACACGACCAAAAGCAAAGAATCTTCCCTTGTCTGAAGCGGGAATCATCTTAGAAACATAGAGCA
TGAGCGGACCATTAGGATCACAGTTTCTGATGGCAGTGGCATACTGATCATCGAGAGGACCTTCATATAAATTCTCAACACGGTACCTCTGTGCAGTGTG
GGGGGATGGAAGGTGAAAGATCATCATCTCAAGCAATGCAGTGCTGGCAGGGAGCCAAGTCTGCATGACACGCTTCATCAAAGGTTTACCCATAAGGATC
ACAGTTTCTGATGGCAGTGGCATACTGATCATCGAGAGGACCTTCATATAAATTCTCAACACGGTACCTCTGTGCAGTGTGGGGGGATGGAAGGTGAAAG
ATCATCATCTCAAGCAATGCAGTGCTGGCAGGGAGCCAAGTCTGCATGACACGCTTCATCAAAGGTTTACCCATAAGCTCCTTCTCATCAGACTTCATCT
GGACACCAAGCTTCTGCAACATAGGCCACAACTTATCCTTCTGGTCGTTCATGCAAGTGGCGATGATCTGCTTGATGGGTTCATAACAGAACTGCACAAA
CCCACGCTTGCAGGTAGCGGACCCAGTGTTCTTGCTGCTCCATTTCCTGGTGGCAGGGTCAAAGAAGTTCTCACCCCACAGCCTCTCCATCATCTTAGTC
TCGTCAACACCGAACTTGGAAGCATAC