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Detailed information on CNT30263667


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 9e-106

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224330Brassica rapaHordeum vulgare67.4798.7683.23477forward
CNT3085191Brassica rapaVigna radiata23.222.8786.59164forward
CNT30543621Brassica rapaBrassica napus21.3658.9898.68151forward
CNT30143750Brassica rapaMedicago truncatula58.9854.4483.93417forward
CNT30665536Brassica rapaTriticum dicoccoides54.1758.1282.77383forward
CNT30722731Brassica rapaTriticum spelta14.7120.3588.46104forward
CNT30705326Brassica rapaPrunus avium95.1952.3783.36673forward
CNT3024028Brassica rapaPopulus trichocarpa49.9347.7783.29353forward

Expression of CNT30263667

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MTRFIKGLPIRSFSSDFIWTPSFCNIGHNLSFWSFMQVAMICLMGS*

>peptide 2 (30 aa)
TFIPVDTLPENTRPKAKNLPLSEAGIILET*

Sequence

>CNT30263667
TGACTTTCATACCAGTGGACACCTTACCAGAGAATACACGACCAAAAGCAAAGAATCTTCCCTTGTCTGAAGCGGGAATCATCTTAGAAACATAGAGCAT
GAGCGGACCATTAGGATCACAGTTTCTGATGGCAGTGGCATACTGATCATCGAGAGGACCTTCATATAAATTCTCAACACGGTACCTCTGTGCAGTGTGG
GGGGATGGAAGGTGAAAGATCATCATCTCAAGCAATGCAGTGCTGGCAGGGAGCCAAGTCTGCATGACACGCTTCATCAAAGGTTTACCCATAAGGTCCT
TCTCATCAGACTTCATCTGGACACCAAGCTTCTGCAACATAGGCCACAACTTATCCTTCTGGTCGTTCATGCAAGTGGCGATGATCTGCTTGATGGGTTC
ATAACAGAACTGCACAAACCCACGCTTGCAGGTAGCGGACCCAGTGTTCTTGCTGCTCCATTTCCTGGTGGCGGGGTCAAAGAATTCTCACCCCACAGCC
TCTCCATCATCTTAGTCTCGTCAACACCGAACTTGGAAGCATACATCTTGGCAAAGTTGGTCAGGGTGAAAGCCCATCCGTGGAGACCAGCAGAGAAGGC
AACAGTTCCCTTCTCAGGGTAAACCTGAACATCACCAAGGAGAGGATCCTCGTACGTTGCCATGATGACATTGGCATTCTCAATGACCCTCTGGAAAGTC
TGGTAAG