CANTATAdb - search

Detailed information on CNT30263621

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30640134	Brassica rapa	Nymphaea colorata	25.27	43.46	81.94	299	forward
CNT30373037	Brassica rapa	Arabidopsis thaliana	21.22	12.32	91.63	251	forward
CNT3071371	Brassica rapa	Quercus suber	24.51	101.05	84.83	290	forward
CNT30405832	Brassica rapa	Beta vulgaris	36.18	53.37	82.71	428	forward
CNT30636551	Brassica rapa	Capsicum annuum	35.67	63.94	84.6	422	forward
CNT30192963	Brassica rapa	Secale cereale	21.39	47.38	86.56	253	forward
CNT30510528	Brassica rapa	Solanum lycopersicum	47.34	43.48	84.46	560	forward
CNT301916	Brassica rapa	Zea mays	30.85	89.68	86.58	365	forward
CNT30212259	Brassica rapa	Helianthus annuus	26.54	47.08	82.48	314	forward
CNT30361348	Brassica rapa	Sorghum bicolor	30.85	69.39	87.4	365	forward
CNT30557952	Brassica rapa	Panicum hallii	32.21	46.75	87.93	381	forward

Expression of CNT30263621

Peptides detected in this lncRNA

>peptide 1 (30 aa)
TFIPVDTLPENTRPKAKNLPLSEAGIILET*

>peptide 2 (83 aa)
MTRFIKGLPISSFSSDFIWTLLRVNLNITKERILVRCHDDISILNNPLESLVSLLTINLKLKETPVHLVHSQNGPNPLPKSLT*

Sequence

>CNT30263621
TGACTTTCATACCAGTGGACACCTTACCAGAGAATACACGACCAAAAGCAAAGAATCTTCCCTTGTCTGAAGCGGGAATCATCTTAGAAACATAGAGCAT
GAGCGGACCATTAGGATCACAGTTTCTGATGGCAGTGGCATACTGATCATCGAGAGGACCTTCATATAAATTCTCAACACGGTACCTCTGTGCAGTGTGG
GGGGATGGAAGGTGAAAGATCATCATCTCAAGCAATGCAGTGCTGGCAGGGAGCCAAGTCTGCATGACACGCTTCATCAAAGGTTTACCCATAAGCTCCT
TCTCATCAGACTTCATCTGGACCCTTCTCAGGGTAAACCTGAACATCACCAAGGAGAGGATCCTCGTACGTTGCCATGATGACATTAGCATTCTCAATAA
CCCTCTGGAAAGTCTGGTAAGCCTCCTCACCATCAACCTGAAGCTCAAGGAAACACCTGTCCATCTTGTTCACAGTCAGAACGGGCCTAATCCTCTCCCC
AAGAGCCTGACGTAGCACAGTCTCGGTCTGAACACACACACCCTCGATACAATCGACCACCACAAGCGCACCATCGGTAATACGGAGCGCAGCAGTGACC
TCAGAGGAGAAACTCGCAGGGAGCCAAGTCTGCATAACACGCTTCATCAAAGGTTTACCCATAAGCTCCTTCTCATCAGACTTCATCTGGACACCAAGCT
TCTGCAACATAGGCCACAACTTATCCTTCTGGTCGTTCATGCAAGTGGCGATGATCTGCTTGATGGGTTCATAACAGAACTGCACAAACCCACGCTTGCA
GGTAGCGGACCCAGTGTTCTTGCTGCTCCATTTCCTGGTGGCAGGGTCAAAGAAGTTCTCACCCCACAGCCTCTCCATCATCTTAGTCTCGTCAACACCG
AACTTGGAAGCATACATCTTGGCAAAGTTGGTCAGGGTGAAAGCCCATCCGTGGAGACCAGCAGAGAAGGCAACAGTTCCCTTCTCAGGGTAAACCTGAA
CATCACCAAGGAGAGGATCCTCGTACGTTGCCATGATGACATTGGCATTCTCAATGACCCTCTGGAAAGTCTGGTAAGCCTCCTCACCATCAACCTGAAG
CTCAAGGAAACACCTGTCCATCTTGTTCACAGTAAGCACGGGCCTAATCCTCTCACCAAGGGCCTGACGTAGCACAGTCTCGG