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Detailed information on CNT30263415


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 1e-134

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512774Brassica rapaJuglans regia94.9156.7383.62708forward
CNT30441049Brassica rapaAegilops tauschii45.8490.4885.67342forward
CNT30309902Brassica rapaCamelina sativa98.9365.0889.16738forward
CNT30612508Brassica rapaArabis alpina10029.3991.02746forward
CNT30448454Brassica rapaSaccharum spontaneum98.5339.8683.13735forward
CNT30716232Brassica rapaMalus domestica golden99.7356.1184.27744forward
CNT30706279Brassica rapaPrunus avium74.891.9384.95558forward

Expression of CNT30263415

Peptides detected in this lncRNA

>peptide 1 (32 aa)
SGNHLRNIEHERTIRITVSDGSGILIIERTFI*

>peptide 2 (46 aa)
MTRFIKGLPIRSFSSDFIWTPSFCNIGHNLSFWSFMQVAMICLMGS*

Sequence

>CNT30263415
GAAGCGGGAATCATCTTAGAAACATAGAGCATGAGCGGACCATTAGGATCACAGTTTCTGATGGCAGTGGCATACTGATCATCGAGAGGACCTTCATATA
AATTCTCAACACGGTACCTCTGTGCAGTGTGGGGGGATGGAAGGTGAAAGATCATCATCTCAAGCAATGCAGTGCTGGCAGGGAGCCAAGTCTGCATGAC
ACGCTTCATCAAAGGTTTACCCATAAGGTCCTTCTCATCAGACTTCATCTGGACACCAAGCTTCTGCAACATAGGCCACAACTTATCCTTCTGGTCGTTC
ATGCAAGTGGCGATGATCTGCTTGATGGGTTCATAACAGAACTGCACAAACCCACGCTTGCAGGTAGCGGACCCAGTGTTCTTGCTGCTCCATTTCCTGG
TGGCGGGGGTCAAAGAAGTTCTCACCCCACAGCCTCTCCATCATCTTAGTCTCGTCAACACCGAACTTGGAAGCATACATCTTGGCAAAGTTGGTCAGGG
TGAAAGCCCATCCGTGGAGACCAGCAGAGAAGGCAACAGTTCCCTTCTCAGGGTAAACCTGAACATCACCAAGGAGAGGATCCTCGTACGTTGCCATGAT
GACATTGGCATTCTCAATGACCCTCTGGAAAGTCTGGTAAGCCTCCTCACCATCAACCTGAAGCTCAAGGAAACACCTGTCCATCTTGTTCACAGTAAGC
ACGGGCCTAATCCTCTCACCAAGGGCCTGACGTAGCACAGTCTCGG