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Detailed information on CNT3026341


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30538793Populus trichocarpaBrassica napus4.2321.593.9883forward
CNT30309275Populus trichocarpaCamelina sativa4.1336.1690.1281forward
CNT30261820Populus trichocarpaBrassica rapa4.3327.1691.7685forward
CNT30609975Populus trichocarpaGossypium raimondii4.0220.8493.6779forward
CNT30429165Populus trichocarpaPapaver somniferum4.2323.3893.9883forward
CNT30115234Populus trichocarpaEutrema salsugineum4.2820.5991.6784forward

Expression of CNT3026341

Peptides detected in this lncRNA

>peptide 1 (98 aa)
ELKSRRPHQKAKSQRRFIVFSLPHLSLHRCPSFTFNFHPSSSPFRICLSVSQLSSFNLHPSSSPFCISRRKPQASLFTCRLAAEQQGSSIDKRITVNF*

>peptide 2 (61 aa)
MPFLHLQFSSFLFSLPYLSQCLSTLFLQFASFLFSLLHLPKKTSGFSLYLQACSRTTRLLH*

>peptide 3 (39 aa)
MKSWCGYLDIKLISNCVSPLISSSRYAQVDFWRCKSWKF*

>peptide 4 (75 aa)
MLMGLVSFLDNFLWDFICLNGIGAGLIRLSACDYHCLLFFLSGFVCGLDSSETTLFRYGYDISVWVIWFDNTILV*

>peptide 5 (29 aa)
MFWCVLILLPCILLVSSNMGLVSIFFNVV*

>peptide 6 (46 aa)
MQMDGLWKFWCDYWVIIDLELISNGMFRTFSHYLVRRRLSFSFVNG*

Sequence

>CNT3026341
TGAACTGAAAAGCCGCCGCCCACACCAAAAAGCAAAGAGCCAAAGACGATTTATCGTCTTCTCCCTTCCGCATCTGTCTCTTCACAGATGCCCTTCCTTC
ACCTTCAATTTTCATCCTTCCTCTTCTCCCTTCCGTATTTGTCTCAGTGTCTCTCAACTCTCTTCCTTCAATTTGCATCCTTCCTCTTCTCCCTTCTGCA
TCTCCCGAAGAAAACCTCAGGCTTCTCTCTTTACTTGCAGGCTTGCAGCAGAACAACAAGGCTCCTCCATTGATAAGCGTATCACTGTAAATTTCTAGGC
TATGTTTTGGTGTGTGTTAATCCTGCTCCCTTGCATTTTGTTGGTGTCTTCAAATATGGGTTTAGTTTCAATCTTCTTCAATGTGGTCTAACCATCTTCT
ATGAACCATGCACTTGCTAGCCTTAGAAATTAAGAGGCATCACTTGTACTTCACTAGTAACATTTGTCTGAATCATGATCTGAATCTTTGATAGCTCCAG
CTTATATGAACACAAAGTGACTGCTGTAGTTTTAATTTGGAGATAGAAGTGAAGTTTCGAAATCTGAAGCTTTGAACAACACCACTTTGATCAGTAGGTT
TTATTGAATGTAATGCTTTACTTACAAAAATTGCAGAAGTGCAGTTGATTGGAGCTTTGTCTTGTCTGAACCTTGGCATTTTCACTTTTGCTGAAGCAGT
AAAGTTTGTTTTTATAAACCGGATTTCATGAAGGGATTAGGTTTCCCGGTTTTTTCCCAAAAAAACCGGATTTAACCGAACCGGACCGGCTCGGTTTGAA
CCGGTTTCCGGTCCGGTTCGGTTAATATTTCTCCAAAATAGTAAAATTCGGTTCAGTTATTTTTTTTAGTCTAAACCGAACCGAATCGAACCGTGAACAC
CCCTAACTAGAACTGGGCCTCTTGGTCTTGAATTTGAAACTATTTTGGGTCTTGAATATGAAACCACGCCGAGCCATCTTGGCCCGCACTAGGGCTTGGC
TATAAATACATTTGAAACCATACCCAATCCCGCAATCAGTTTTCCTTCTCCTTCTCATTGGGGGCTTCAAAAAGCTTAACAGTCCCCACCGCCATCACCA
TGAGAGCTAAGTGGAAGAAGAAGCGTATGAGGAGATTGAAGAGGAAGCGTAGAAAGATGAGGCAGAGATCTAAGTAGATTTTCTCATTTCCGATTACTTT
CTTCTTCTTTTCTTCTAGTGTGTTTTAAATCAAACGGTGGAGTATGTAGTTTCCCCTTGTGTTTTGATTAATCGGATGATGGGCTTTATCTATGGATATA
TTTATTTGTTTTCTTTGAATGTTGATGGGTTTGGTTTCTTTCCTTGATAATTTCCTTTGGGATTTTATCTGTTTAAATGGAATTGGAGCTGGATTGATAA
GATTGTCTGCTTGTGATTATCATTGTTTGCTCTTTTTTTTGTCGGGTTTTGTTTGTGGGTTAGATAGTAGTGAAACCACATTGTTTCGATATGGTTATGA
CATCTCGGTTTGGGTCATTTGGTTTGACAATACAATCCTGGTTTGATTTTGCGTTTTATTGTGATTTGTGCTGAGAGATTATGAAATCTTGGTGTGGTTA
TTTGGATATCAAGTTGATAAGTAATTGTGTGTCTCCTCTCATTTCGTCATCTCGTTATGCTCAAGTTGATTTTTGGCGATGCAAATCATGGAAGTTTTGA
GGTAATTGGTGGGGTGTTGTAGTTTTGGGGATGATTAGGTAATTGGATGTTGTGGACGGGATGATGAGGTAATGGGATTTTGTGTGTTATTGTTGTCGTG
CGCAAGCTGATTTGCTGCGATGCAAATGGATGGGTTGTGGAAGTTCTGGTGTGATTATTGGGTTATTATTGATCTGGAGTTGATAAGTAATGGGATGTTT
CGCACTTTTTCGCACTATTTAGTCAGGCGCAGGCTGAGCTTCAGCTTTGTAAATGGTTAGCGG