CANTATAdb - search

Detailed information on CNT30263225

BLAST search results

BLAST vs Swiss-Prot:
sp|P59271|R27AA_ARATH, E-value = 9e-88

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30374078	Brassica rapa	Arabidopsis thaliana	31.1	33.28	86.27	204	forward
CNT30540854	Brassica rapa	Brassica napus	24.7	35.29	96.3	162	forward
CNT30357019	Brassica rapa	Lactuca sativa	33.38	20.68	86.3	219	forward

Expression of CNT30263225

Peptides detected in this lncRNA

>peptide 1 (36 aa)
PICFTTVRLNMKCYLDMHKSKKNRTSNHSSSGFLKT*

Sequence

>CNT30263225
CCTATTTGTTTTACAACGGTAAGACTGAATATGAAATGTTATCTAGACATGCACAAAAGCAAAAAAAACAGAACATCTAATCACTCTTCATCAGGCTTCT
TGAAGACATAAGTGGTTCCACACTTGCCACAGTAATGCCTATCGAAATGACTCGCCATGAACGTTCCCGGACCACAACTAACCGAAGGACACTCTTTCCT
GAGCCTCTGAACCTTGCCTGAACCATCGACCTTGTAAAACTGCAGAACCGCGAGCTTCACTTTCTTGTGCTTGTGTTTGATCTTCTTGGGCTTCGTGTAC
GTCTTCTTCTTCCTCTTCTTCGCTCCTCCTCTCAGGCGGAGCACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTCCTCCCGTCTT
CCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGAATCTTGGCCTTCACATTGTCGATCGTGTCGGATGATTC
GACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTTTCGTCTGAGAACGACGCTGTTGAGCTTAGCAAGAGGTTTTATACCA
AGGGTACTAGGGTTACGAGCCCATGGGTTTGCACTATTCTTGGGCTTTAGGCCCAA