Detailed information on CNT30263085


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30561159Brassica rapaActinidia chinensis71.7587.6197.781308forward
CNT3083041Brassica rapaBrassica juncea82.4510099.871503forward

Expression of CNT30263085

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MHPFQKSGFVARISSRITTVIRVVVTIKQTITDLMSHSQFHSLNSFILTHAWLNL*

>peptide 2 (44 aa)
MLSQLFVFHKSKNFTSDYEIRMPPTVPVNHYSDPEGQHNRIEIL*

>peptide 3 (34 aa)
MHKLCKDARITSAGLCVHDFPTEGDAANNILSKA*

>peptide 4 (32 aa)
MKYECPRLSLLIITPIPKANTIGSKSYDVIPC*

>peptide 5 (44 aa)
MTTGRINQVAFINQDKTTSYSRKHKESGNRRRLDRHLLSGDKRA*

Sequence

>CNT30263085
CATAGTCCCTCTAAGAAGCCGGCCGTGAAGGGATGCCTCCACGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCT
CCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTCAATCCTTACTATGTCTGGACCTGGTAAGTTTCCCCGT
GTTGAGTCAAATTAAGCCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCCTTGCGACCATACTCCCCCCGGAACCCAAAA
ACTTTGATTTCTCATAAGGTGCCAGCGGAGTCCTAAAAGCAACATCCGCTGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCG
TCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCGCAGTTGTTCGTCTTTCATAAATCCAAGAATTTCACCTCTGA
CTATGAAATACGAATGCCCCCGACTGTCCCTGTTAATCATTACTCCGATCCCGAAGGCCAACACAATAGGATCGAAATCCTATGATGTTATCCCATGCTA
ATGTATACAGAGCGTAGGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGCGCCGGAGGCACGACCCGGCCAGTTAAGGCCAGGAGCGTATCGCCG
ACAGAAGAGACAAGCCGACCGGTGCTCACCGAAGGCGGACCGGGCGACCCATCCCAAGGTTCAACTACGAGCTTTTTAACTGCAACAACTTAAATATACG
CTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAATGGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACTC
AAAGAGCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCA
GGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTTACCACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAAT
GATGCGTCGCCAGCACTAAGGCCATGCGATCCGTCGAGTTATCATGAATCATCAGAGCAACGGGCAGAGCCCGCGTCGACCTTTTATCTAATAAATGCAT
CCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGTAGTTACCATCAAACAAACTATAACTGATTTAATGA
GCCATTCGCAGTTTCACAGTCTGAATTCGTTCATACTTACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAGGATCAACCAGGTAGC
ATTCATAAATCAGGACAAGACCACGTCATATTCCCGCAAACACAAGGAAAGTGGGAACAGACGCAGACTTGACCGTCATCTTTTGTCCGGAGACAAACGT
GCTTAGCGGGACAGAATTTCTTCGGGTCACCGCCATAATATTTCCGCAACCGAGATCTCAGCAAACAGCTTATTCACCTTTGCGAACAATGCATAAACTA
TGCAAAGACGCAAGGATCACAAGTGCCGGCTTATGTGTTCACGACTTCCCCACTGAAGGAGATGCCGCAAACAACATTTTAAGCAAAGCTTAACAATTCC
TTCCAGATAGGTACGCAACACAGGCCCCGGATCAGTTCAACAAGCATAAAACTATGCTAGTGAAGAAACTGAGGAGGATAGTTGGTCTGTAGTTGGGTGC
GCGAGCACAGAGCCTACAAATAC