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Detailed information on CNT30263082


BLAST search results

BLAST vs Swiss-Prot:
sp|Q96528|CATA1_ARATH, E-value = 2e-78

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30532478Brassica rapaEucalyptus grandis55.8244.9580.21187forward
CNT30516671Brassica rapaJuglans regia75.8254.2782.68254forward
CNT30373064Brassica rapaArabidopsis thaliana86.2750.6183.74289forward
CNT30501026Brassica rapaCoffea canephora82.3918.0782.61276forward
CNT30282683Brassica rapaChenopodium quinoa99.136.0582.53332forward
CNT3021611Brassica rapaCitrullus lanatus72.5461.2181.89243forward
CNT30405510Brassica rapaBeta vulgaris57.6141.0681.87193forward
CNT30708912Brassica rapaGlycine max80.931.1182.66271forward
CNT3046375Brassica rapaPrunus dulcis97.3146.782.21326forward
CNT3098188Brassica rapaSolanum tuberosum28.3619.1586.3295forward
CNT30223811Brassica rapaHordeum vulgare46.2772.4379.35155forward
CNT3085325Brassica rapaVigna radiata91.9443.5680.84308forward
CNT30542456Brassica rapaBrassica napus85.3766.283.92286forward
CNT30238041Brassica rapaBrassica oleracea77.9134.3482.76261forward
CNT30668803Brassica rapaTriticum dicoccoides96.424279.57323forward
CNT30313019Brassica rapaCamelina sativa68.6637.5892.17230forward
CNT3080335Brassica rapaBrassica juncea48.0628.485.09161forward
CNT30475173Brassica rapaSaccharum spontaneum88.9640.1183.56298forward
CNT30654455Brassica rapaRosa chinensis22.9916.8584.4277forward
CNT30715065Brassica rapaMalus domestica golden97.612381.35327forward
CNT30624536Brassica rapaDaucus carota75.8218.0881.89254forward
CNT30478285Brassica rapaArabidopsis halleri33.1332.0889.19111forward
CNT30370393Brassica rapaOryza glumipatula2028.5185.0767forward
CNT30154268Brassica rapaPrunus persica58.8141.3983.76197forward
CNT30570453Brassica rapaVitis vinifera36.1227.5685.95121forward
CNT30704833Brassica rapaPrunus avium97.0145.5280.92325forward
CNT3022395Brassica rapaPopulus trichocarpa85.3769.5987.76286forward
CNT30576697Brassica rapaOryza barthii21.1916.3685.9271forward

Expression of CNT30263082

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MDARNHNSRAESNLLILIKEVVDVFVQDQASNRLQRQDILRPDLGHIKRVEVKLIL

>peptide 2 (32 aa)
MFLFKTKRPTGCRGKISSGQILVTSSGSKSNLS

>peptide 3 (49 aa)
LLISVHEVHETFMVIVMVSTFGGIDRQLQIVWSKTVSLTIRVGEDPSLE*

Sequence

>CNT30263082
ACCTCCTCATCTCTGTGCATGAAGTTCATGAAACCTTCATGGTGATTGTTATGGTGAGCACATTTGGGGGCATTGACCGGCAGCTGCAGATAGTTTGGTC
CAAGACGGTGTCTCTGACTATCCGCGTAGGAGAAGATCCTAGTCTGGAGTAGCTTATCGTCTGAGTAATGGACGCCAGGAACCACAATAGCAGGGCAGAA
AGCAATCTGCTCATTCTCATTAAAGAAGTTGTCGATGTTTTTGTTCAAGACCAAGCGTCCAACAGGCTGCAGAGGCAAGATATCCTCAGGCCAGATCTTG
GTCACATCAAGCGGGTCGAAGTCAAACTTATCCTC