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Detailed information on CNT30262720


BLAST search results

BLAST vs Swiss-Prot:
sp|P69325|UBIQP_SOYBN, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30636081Brassica rapaCapsicum annuum73.4149.5483.81914forward
CNT30540597Brassica rapaBrassica napus100.0873.4295.431246forward
CNT30235198Brassica rapaBrassica oleracea66.8375.7791.83832forward
CNT30460578Brassica rapaSaccharum spontaneum71.4944.4882.7890forward
CNT30623810Brassica rapaDaucus carota73.4953.0183.61915forward
CNT30410857Brassica rapaPapaver somniferum73.4169.9883.15914forward
CNT3028051Brassica rapaTheobroma cacao70.7672.2781.95881forward
CNT30326890Brassica rapaAsparagus officinalis73.4174.0782.6914forward

Expression of CNT30262720

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MRRCWSGGMPSLSWILAFTLSIVSELSTSSVIVLPVNVLTKICMPPRSLSTKWRVDSFWML*

>peptide 2 (74 aa)
MKSRLLLDVVVSKSPAVFQLLSGEDEPLLIRRNAFLVLNLGFNVVDGVRAFHLKGDGLSGEGFHKDLHLKIHTK*

>peptide 3 (58 aa)
MRRCWSGGMPSLSWILAFTLSIVSELSTSNVMVLPVRVFTNICIPPRRRKTKWRVDSF*

Sequence

>CNT30262720
TGTCACCTGATAATACTAAATCGGGACAATACTACACAAACTAGCAGAAGGCACAGCATTAATACACACAAATCACAATAGAGAGACAAGGATAAAGAGC
AACGACTATTATATTCCACAAAAGAAGTTCGATATAACAAAGGAGAAACAAGGACGCAGAGCGCGTTCATCAATTATTGATCACGGGGCTTTACAAAGAC
CCCAAAACACAACCATAAGAAGTTTTTTAAAAGAAAAGCAGACACTGACAAGAGTTTCAGAAGCCACCACGGAGACGGAGGACCAAGTGAAGCGTGGACT
CCTTCTGGATGTTGTAGTCGGCTAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCTTG
GATCTTGGCCTTCACGTTGTCAATAGTGTCGGAGCTCTCCACCTCAAGCGTGATCGTCTTGCCGGTCAATGTCTTAACGAAAATCTGCATGCCACCACGA
AGCCTTAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCCAAAGTACGACCATCCTCAAGCTGTTTGCCAGCGAAGATGAGACGCTGCT
GGTCTGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACTTTATCAATAGTGTCCGAACTCTCAACCTCCAATGTGATGGTCTTGCCGGTAAGGGT
CTTCACAAATATCTGCATACCTCCACGTAGACGCAAGACCAAGTGGAGAGTCGACTCTTTCTGAATGTTGTAGTCAGCTAGAGTCCTTCCATCCTCCAAC
TGCTTGCCGGCAAATATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCCTGAATCTTGGCCTTGACATTATCAATAGTGTCAGAGCTCTCCACCT
CCAAAGTAATCGTCTTCCCCGTCAAAGTCTTGACAAAAATTTGCATGCCACCACGGAGCCTGAGGACGAGATGAAGAGTAGACTCCTTCTGGATGTTGTA
GTCAGCAAGAGTCCTGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCTTTAACG
TTGTCGATGGTGTCAGAGCTTTCCACCTCAAGGGTGATGGTCTTTCCGGTGAGGGTTTTCACAAAGATCTGCATCTGAAAATTCACACAAAATAATTAAC
ATCAGTAATCAATTTCGAAAATAATCACTAATCAGATCGAACCAA