Detailed information on CNT30262710


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374695Brassica rapaArabidopsis thaliana56.7242.4597.131325forward
CNT30312195Brassica rapaCamelina sativa73.1668.5298.361709forward

Expression of CNT30262710

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MVRLVFRPYTQVRRTICTSVSLRASTRVSSGFAPLRHSSPSFGSRQACSHSNPSQKIKVGRLCTREGSSQSASLRLTGLLTR*

>peptide 2 (29 aa)
MHRTPRDVRCSSSRWTLPPAEPFPGWAGC*

>peptide 3 (34 aa)
MGSPQADALSTQMPRHAVRRVLQTTIKAATSPRA*

>peptide 4 (37 aa)
MAHLELSIPWDGSTKQPPRPTYLKFENRSRTLRPRCL*

>peptide 5 (47 aa)
MTRIKFTTACQDAPDVLSSDFGQPRAVTHGRSASVPYPREDGGTTICD

>peptide 6 (53 aa)
MSTTGRERHSVLRIFKGRRECTGHHATCGALPAAGPYLRLSRFQGGQAVKQKR*

>peptide 7 (86 aa)
MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIEAWLLPRRPGIGRALQRHPFSGLVDSAGELLHTP*

Sequence

>CNT30262710
TGCCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAA
GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAGCATCCGC
AGGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTGAGTTGGCTGTTCACCTTGGAGACCTGATGCGGTTAT
GAGTACGACCGGGCGTGAGCGGCACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGAATGCACCGGACACCACGCGACGTGCGGTGCTCTTCCAGCCGCT
GGACCCTACCTCCGGCTGAGCCGTTTCCAGGGTGGGCAGGCTGTTAAACAGAAAAGATAACTCTTTCCGGAATTCCCGCCGACGTCTCCGGACTCCCTAA
CGTTGCCGTCAACCGCCACGTCCCGGTTCCGGAATTTTAACCGGATCCCCTTTCGAAGTTCGCGCATAAGCGCTATCAGACGGGTTTCCCCCGACTCTTA
GGATCGACTAACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCCCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCT
GCACCGACGGCCGCTCCGCCCGGGCTCGCGCCCTAGGTTTTGCAGCGACCGCCGCGCCCTCCTACTCATCGAGGCCTGGCTCTTGCCCCGACGGCCGGGT
ATAGGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCG
TCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGGTTAGCGCGCAGTTGGGCACCGTAACCCGGCTTCCGGTTCATCCCGCATCGCCAGTTCT
GCTTACCAAAAATGGCCCACTTGGAGCTCTCGATTCCGTGGGATGGCTCAACAAAGCAGCCACCCCGTCCTACCTATTTAAAGTTTGAGAATAGGTCGAG
GACATTGCGTCCCCGATGCCTCTAATCATTGGCTTTACCCGATAGAACTCGTTTCCGAGCTCCAGCTATCCTGAGGGAAACTTCGGAGGGAACCAGCTAC
TAGATGGTTCGATTAGTCTTTCGCCCCTATACCCAAGTCAGACGAACGATTTGCACGTCAGTATCGCTGCGGGCCTCCACCAGAGTTTCCTCTGGCTTCG
CCCCGCTCAGGCATAGTTCACCATCTTTCGGGTCCCGACAGGCATGCTCACACTCGAACCCTTCTCAGAAGATCAAGGTCGGTCGGCTGTGCACCCGTGA
GGGATCCAGCCAATCAGCTTCCTTGCGCCTTACGGGTTTACTCACCCGTTGACTCGCACACATGTCAGACTCCTTGGTCCGTGTTTCAAGACGGGTCGAA
TGGGGAGCCCACAGGCCGACGCCCTGAGCACGCAGATGCCGAGGCACGCCGTGAGGCGCGTGCTGCAGACCACGATTAAGGCAGCGACGTCTCCACGGGC
GTAACAAAAGCCCGGGCTTAGGTCACCACCTTAATCCGCGTCGGTCCACGCCCCGAATCGATCGGCGGACCGGATTGCTCCGTTCCGCATCCGACCAGGA
CGCATCGCCGGCCCCCATCCGCTTCCCTCCCGACAATTTCAAGCACTCTTTGACTCTCTTTTCAAAGTCCTTTTCATCTTTACCTCGCGGTACTTGTTCG
CTATCGGTCTCTCGCCCATATTTAGCCTTGGACGGAATTTACCGCCCGATTGGGGCTGCATTCCCAAACAACCCGACTCGTAGACAGCGCCTCGTGGTGC
GACAGGGTCCGGGCACGACGGGGCTCTCACCCTCTCTGGCGCCCCTTTCCAGGGAACTTGGGCCCGGTCCGTCGCTGAGGACGCTTCTCCAGACTACAAT
TCGAACGCCGAAGACGTCCGATTTTCAAGCTGGGCTCTTCCCGGTTCGCTCGCCGTTACTAAGGGAATCCTTGTTAGTTTCTTTTCCTCCGCTTATTGAT
ATGCTTAAACTCAGCGGGTGATCCCGCCTGACCTGGGGTCGCGTTGAGGACTTTGGGTCATCAAGAGCTTTTGGACCGGAACGTCTGACTATATGACGAG
AATTAAATTCACCACCGCATGTCAAGACGCTCCTGACGTCCTTAGCTCGGATTTTGGCCAACCGCGTGCGGTAACACACGGGAGATCAGCTTCCGTCCCA
TATCCTCGAGAGGATGGGGGGACGACGATTTGTGAC