Detailed information on CNT30262562


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30544747Brassica rapaBrassica napus94.4394.0699.172409forward
CNT30434075Brassica rapaPapaver somniferum92.9488.3492.452371reverse complement

Expression of CNT30262562

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MVRLVFRPYTQVRRTICTSVSLRASTRVSSGFAPLRHSSPSFGSRQACSHSNPSQKIKVGRLCTREGSSQSASLRLTGLLTR*

>peptide 2 (53 aa)
MSTTGRERHSVLRIFKGRRECTGHHATCGALPAAGPYLRLSRFQGGQAVKQKR*

>peptide 3 (44 aa)
MTRIKFTTACQDAPDVLSSDFGQPRAVTHGRSASVPYPQEDGGTT

>peptide 4 (37 aa)
MAHLELSIPWDGSTKQPPRPTYLKFENRSRTLRPRCL*

>peptide 5 (34 aa)
MGSPQADALSTQMPRHAVRRVLQTTIKAATSPRA*

>peptide 6 (29 aa)
MHRTPRDVRCSSSRWTLPPAEPFPGWAGC*

>peptide 7 (33 aa)
MEPFPSSAFKFSFEYLLLPPRSAPTAAPPGLAP*

Sequence

>CNT30262562
GCCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAG
AGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAGCATCCGCA
GGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTGAGTTGGCTGTTCGACGCCCGGGGAAAGCTCCCGAAAG
AGCCGTTCCCAGTCCGTCCCCCGGCCGACACGAGGCGGTCCGCTCTCGCCACGTTAGCAGCTCAAGCAGCCCGCCAACAGTCGACGGGTTCGGAACTGGG
ACCCCCGAGCCCAGCCCTCAGAGCCAATCCTTTTCCCGAAGTTACGGATCCATTTTGCCGACTTCCCTTGCCTACATTGTTCCATCGACCAGAGGCTGTT
CACCTTGGAGACCTGATGCGGTTATGAGTACGACCGGGCGTGAGCGGCACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGAATGCACCGGACACCACGC
GACGTGCGGTGCTCTTCCAGCCGCTGGACCCTACCTCCGGCTGAGCCGTTTCCAGGGTGGGCAGGCTGTTAAACAGAAAAGATAACTCTTTCCGGAATTC
CCGCCGACGTCTCCGGACTCCCTAACGTTGCCGTCAACCGCCACGTCCCGGTTCCGGAATTTTAACCGGATCCCCTTTCGAAGTTCGCGCATAAGCGCTA
TCAGACGGGTTTCCCCCGACTCTTAGGATCGACTAACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCCCCTCTTCGGCCTTCAAATTCTCATTTGAA
TATTTGCTACTACCACCAAGATCTGCACCGACGGCCGCTCCGCCCGGGCTCGCGCCCTAGGTTTTGCAGCGACCGCCGCGCCCTCCTACTCATCGAGGCC
TGGCTCTTGCCCCGACGGCCGGGTATAGGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGC
GGATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGGTTAGCGCGCAGTTGGGCACCGTAACCCGGCTTCC
GGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCTCTCGATTCCGTGGGATGGCTCAACAAAGCAGCCACCCCGTCCTACCTA
TTTAAAGTTTGAGAATAGGTCGAGGACATTGCGTCCCCGATGCCTCTAATCATTGGCTTTACCCGATAGAACTCGTTTCCGAGCTCCAGCTATCCTGAGG
GAAACTTCGGAGGGAACCAGCTACTAGATGGTTCGATTAGTCTTTCGCCCCTATACCCAAGTCAGACGAACGATTTGCACGTCAGTATCGCTGCGGGCCT
CCACCAGAGTTTCCTCTGGCTTCGCCCCGCTCAGGCATAGTTCACCATCTTTCGGGTCCCGACAGGCATGCTCACACTCGAACCCTTCTCAGAAGATCAA
GGTCGGTCGGCTGTGCACCCGTGAGGGATCCAGCCAATCAGCTTCCTTGCGCCTTACGGGTTTACTCACCCGTTGACTCGCACACATGTCAGACTCCTTG
GTCCGTGTTTCAAGACGGGTCGAATGGGGAGCCCACAGGCCGACGCCCTGAGCACGCAGATGCCGAGGCACGCCGTGAGGCGCGTGCTGCAGACCACGAT
TAAGGCAGCGACGTCTCCACGGGCGTAACAAAAGCCCGGGCTTAGGTCACCACCTTAATCCGCGTCGGTCCACGCCCCGAATCGATCGGCGGACCGGATT
GCTCCGTTCCGCATCCGACCAGGACGCATCGCCGGCCCCCATCCGCTTCCCTCCCGACAATTTCAAGCACTCTTTGACTCTCTTTTCAAAGTCCTTTTCA
TCTTTACCTCGCGGTACTTGTTCGCTATCGGTCTCTCGCCCATATTTAGCCTTGGACGGAATTTACCGCCCGATTGGGGCTGCATTCCCAAACAACCCGA
CTCGTAGACAGCGCCTCGTGGTGCGACAGGGTCCGGGCACGACGGGGCTCTCACCCTCTCTGGCGCCCCTTTCCAGGGAACTTGGGCCCGGTCCGTCGCT
GAGGACGCCTCTCCAGACTACAATTCGGACGGCACAGCCGCCCGATTCTCAAGCTGGGCTGCTCCCGGTTCGCTCGCCGTTACTAGGGGAATCCTTGTAA
GTTTCTTTTCCTCCGCTTATTGATATGCTTAAACTCAGCGGGTGATCCCGCCTGACCTGGGGTCGCGTTGAGGACTTTGGGTCATCAAGAGCTTTTGGAC
CGGAACGTCTGACTATATGACGAGAATTAAATTCACCACCGCATGTCAAGACGCTCCTGACGTCCTTAGCTCGGATTTTGGCCAACCGCGTGCGGTAACA
CACGGGAGATCAGCTTCCGTCCCATATCCTCAAGAGGATGGGGGGACGACG