Detailed information on CNT30262381


BLAST search results

BLAST vs Swiss-Prot:
sp|P69325|UBIQP_SOYBN, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3061502Brassica rapaArabidopsis lyrata27.2860.7891.76437forward
CNT30608839Brassica rapaGossypium raimondii56.9982.1881.6913forward
CNT3067522Brassica rapaLeersia perrieri57.1274.0381.97915forward
CNT30477817Brassica rapaArabidopsis halleri57.1885.6187.45916forward
CNT30364985Brassica rapaSorghum bicolor55.6286.8483.05891forward
CNT3056329Brassica rapaAmborella trichopoda56.6278.5381.92907forward
CNT3066362Brassica rapaSelaginella moellendorffii56.9992.683.13913forward

Expression of CNT30262381

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSELSTSSVIVFPVKVFTKICMPPRRRKTR*

>peptide 2 (32 aa)
RDKDKEQRLLYSTKEVRYNKGETRTQSAFINY*

>peptide 3 (80 aa)
ETRIKSNDYYIPQKKFDITKEKQGRRARSSIIDHGALQRPQNTTIRSFLKEKQTLTRVSEATTETEDQVKRGLLLDVVVG*

>peptide 4 (52 aa)
MRRCWSGGMPSLSWILAFTLSIVSELSTSSVIVLPVNVLTKICMPPRSLSTK*

>peptide 5 (73 aa)
MKSRLLLDVVVRQSTTILKLFASEDETLLVWRDAFLVLDLGLHVVNSVGALHLKRDRLAGQCLNENLHATTKP*

>peptide 6 (61 aa)
MRRCWSGGMPSLSWILAFTLSIVSELSTSSVIVLPVNVLTKICMPPRSLSTKWRVDSFWML*

Sequence

>CNT30262381
GAGAGACAAGGATAAAGAGCAACGACTATTATATTCCACAAAAGAAGTTCGATATAACAAAGGAGAAACAAGGACGCAGAGCGCGTTCATCAATTATTGA
TCACGGGGCTTTACAAAGACCCCAAAACACAACCATAAGAAGTTTTTTAAAAGAAAAGCAGACACTGACAAGAGTTTCAGAAGCCACCACGGAGACGGAG
GACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGA
GGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTGTCAATAGTGTCGGAGCTCTCCACCTCAAGCGTGATCGTCTTGCCGGTCAATGTCTTAACGA
AAATCTGCATGCCACCACGAAGCCTTAGCACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCCAAAGTACGACCATCCTCAAGCTGTTTGCC
AGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTGTCAATAGTGTCGGAGCTCTCCACCTCAAGCGTG
ATCGTCTTGCCGGTCAATGTCTTAACGAAAATCTGCATGCCACCACGAAGCCTTAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCCA
AAGTACGACCATCCTCAAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTGGATTTTGGCTTTCACGTTGTCAAT
GGTGTCGGAACTCTCCACCTCTAGCGTGATCGTCTTTCCTGTTAAAGTCTTCACGAAGATCTGCATGCCTCCACGTAGACGCAAGACCAGGTGAAGCGTA
GACTCCTTCTGGATATTGTAATCAGCCAAGGTCCTGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGT
CCTGAATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCAAGGGTGATGGTCTTTCCGGTGAGGGTTTTCACAAAGATCTGCATCTGAAA
ATTCACACAAAATAATTAACATCAGTAATCAATTTCGAAAATAATCACTAATCAGATCGAACCAAGAAACTAATCTCCGATCGCCAAGGATAACAACGCA
GATGATCATATCATAACATAGCTCTAAAATTGAAAACTCAACTATATAAATCAAATCTTCAATGATAAAATTGCAAAGAGCAATCACAGTTACACGAATT
GATACAGAATCTACACGAAAATCACAGATCGACGCTTAACAACAGAGATCCACGAATACTAACAATCAATAATCAAATCGTTCAAACACTAATCAGATCC
TACCAAGAAACTGAGCCTAGATCGTAAAAACGCAGATGAACACACAAAAAGACGAATCGAAAAAGAGATCACGTTGATCGACGAATCAAATTCAAAAACA
GAGCGATTCAAACGAAACAACTAATAGAGTAGATGAGATCAAGAGACTCACTTTGATTGAAACTTGCGATTGAGAGAGGATTGTTTTTGATTATCGAATT
CG