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Detailed information on CNT30262296


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43364|EFTUB_NICSY, E-value = 1e-87

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691003Brassica rapaOryza sativa21.3414.7387.79172forward
CNT30376649Brassica rapaArabidopsis thaliana40.0714.6487.31323forward
CNT3045091Brassica rapaPrunus dulcis10.6721.5587.2186forward
CNT30303025Brassica rapaTriticum aestivum8.8125.9188.7371forward
CNT30237230Brassica rapaBrassica oleracea43.842.0296.6353forward
CNT30312423Brassica rapaCamelina sativa23.9542.3287.56193forward
CNT3061914Brassica rapaArabidopsis lyrata14.6429.4386.44118forward
CNT3075841Brassica rapaBrassica juncea42.0641.19100339forward
CNT30626736Brassica rapaDaucus carota21.7119.3879.43175forward
CNT30573737Brassica rapaVitis vinifera22.2157.9383.8179forward
CNT3037862Brassica rapaCucumis melo21.4631.8680.35173forward
CNT30100297Brassica rapaOryza rufipogon21.3413.0487.79172forward

Expression of CNT30262296

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MARTVDVSVVTILCLVLDGRGVDGDSTSSLLRRRVDLVVLLGDAVSHGS*

>peptide 2 (51 aa)
MVIPRALSSGAASISSYFLATLFPMEAKAMVRAAVKVVFPWSTWPIVPMLT*

>peptide 3 (70 aa)
MVHVADCADVDVRLLPLEFSSGGAYGEGGAAEGVRGRGRRSSVGGIKESSGGRSSGGRRKRHGKSRGGGE*

Sequence

>CNT30262296
GTAACAGTGTAGTTCCTAGTCTCTCTTAACCCGACCAAATCAACAGTCTCTCCAACTTTAACCGTACCTCTTTCGACACGACCCGTAGCGACAGTACCAC
GACCGGTGATCGAAAACACATCTTCGACAGCTAACAAGAACGGCAAGTCCGTCTGTCTTGTCGGAATAGGGATGTAACTATCAACGGAATCCATCAACTC
GTAAATCTTATCCACCCATTTGTTCTCACCTCTCTTCACGTTGGGATTCGCAGTGAGAGTCTCGACAGCTAACAAAGCGGAGCCGGAGATAATCGGAATA
TCATCACCGATAGCTCCGTCCATCTGAGCAGCTCCGGTGATCATGTTCTTGACGTAATCTGCATGGCCAGGACAGTCGACGTGAGCGTAGTGACGATTCT
CTGTCTCGTACTCGACGGTCGCGGTGTTGATGGTGATTCCACGAGCTCTCTCCTCCGGCGCCGCGTCGATCTCGTCGTACTTCTTGGCGACGCTGTTTCC
CATGGAAGCTAAGGCCATGGTAAGAGCGGCGGTTAAAGTGGTTTTCCCATGGTCCACGTGGCCGATTGTGCCGATGTTGACGTGAGGCTTCTTCCTCTCG
AATTTTCCTCTGGCGGCGCGTACGGTGAAGGCGGCGCGGCGGAGGGGGTGAGGGGAAGAGGAAGGAGAAGCAGCGTAGGAGGAATAAAGGAGTCTAGTGG
AGGAAGAAGTAGCGGCGGGAGAAGAAAACGCCATGGGAAGAGCAGAGGAGGAGGAGAGTGAAGACGTTTGTGTGTGGAGTGTTATTTGTAATGGGGAGAA
AAGGTA