Detailed information on CNT30262285


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 1e-158

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30612915Brassica rapaArabis alpina72.270.9486.25691forward

Expression of CNT30262285

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MRRCWSGGMPSLSWILAFTLSIVSELSTSSVIVLPVNVLTKICMPPRSLSTKWRVDSFWML*

>peptide 2 (52 aa)
MRRCWSGGMPSLSWILAFTLSIVSELSTSNVMVLPVRVFTNICIPPRRRKTK*

>peptide 3 (74 aa)
MKSRLLLDVVVRQSPAVFQLLSGEDEPLLIRRNAFLVLNLGFNVVDGVRAFHLKGDGLSGEGFHKDLHLKIHTK*

>peptide 4 (81 aa)
RETRIKSNDYYIPQKKFDITKEKQGRRARSSIIDHGALQRPQNTTIRSFLKEKQTLTRVSEATTETEDQVKRGLLLDVVVG*

Sequence

>CNT30262285
ATAGAGAGACAAGGATAAAGAGCAACGACTATTATATTCCACAAAAGAAGTTCGATATAACAAAGGAGAAACAAGGACGCAGAGCGCGTTCATCAATTAT
TGATCACGGGGCTTTACAAAGACCCCAAAACACAACCATAAGAAGTTTTTTAAAAGAAAAGCAGACACTGACAAGAGTTTCAGAAGCCACCACGGAGACG
GAGGACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCC
GGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTGTCAATAGTGTCGGAGCTCTCCACCTCAAGCGTGATCGTCTTGCCGGTCAATGTCTTAA
CGAAAATCTGCATGCCACCACGAAGCCTTAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCCAAAGTACGACCATCCTCAAGCTGTTT
GCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACTTTATCAATAGTGTCCGAACTCTCAACCTCCAAT
GTGATGGTCTTGCCGGTAAGGGTCTTCACAAATATCTGCATACCTCCACGTAGACGCAAGACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCG
CCAAAGTCCTGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCTTTAACGTTGTC
GATGGTGTCAGAGCTTTCCACCTCAAGGGTGATGGTCTTTCCGGTGAGGGTTTTCACAAAGATCTGCATCTGAAAATTCACACAAAATAATTAACATCAG
TAATCAATTTCGAAAATAATCACTAATCAGATCGAACCAAGAAACTAATCTCCGATC