Detailed information on CNT30261984


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 8e-152

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30541358Brassica rapaBrassica napus85.5857.5897.99748forward
CNT3075399Brassica rapaBrassica juncea10070.5499.89874forward
CNT30120657Brassica rapaCitrus clementina71.2862.3684.43623forward

Expression of CNT30261984

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MISFQENETLKATTETQHQVKGRLLLDVVVG*

>peptide 2 (31 aa)
MPQTHTHTNHDKFSRKRDIKSHHGDATPSEG*

>peptide 3 (40 aa)
MVSELSTSSVIVFPVKVLTKICMPPRSLRTRCRVDSFWML*

>peptide 4 (41 aa)
KSKENIFQDRNIRMDLRTEREREINYSRGFIMPQTHTNHDK*

>peptide 5 (60 aa)
MKSRLLLNVVVGQCTTILQLLAGKDQTLLVGRDSLLVLYLSLDVIDGVGALHLECDRLSR*

>peptide 6 (31 aa)
SRVKKIYSKIETFEWILERKEKERSIIQEAL*

>peptide 7 (52 aa)
MRRCWSGGMPSLSWILALTLSIVSELSTSSVMVLPVKVLTKICMPPRRRNTR*

Sequence

>CNT30261984
TCAAGAGTAAAGAAAATATATTCCAAGATAGAAACATTCGAATGGATCTTAGAACGGAAAGAGAAAGAGAGATCAATTATTCAAGAGGCTTTATAATGCC
TCAAACACACACAAACCATGATAAGTGAGAAAGAGAGATCAATTATTTAAGAGGCTTTATAATGCCTCAAACACACACACACACAAACCATGATAAGTTT
TCAAGAAAACGAGACATTAAAAGCCACCACGGAGACGCAACACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTGCGACCATCCTC
AAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTATCAATCGTGTCCGAGCTCTCG
ACCTCCAGTGTGATGGTCTTACCAGTCAAGGTCTTGACAAAGATTTGCATGCCTCCACGCAGACGTAACACGAGATGAAGAGTCGACTCCTTCTGAATGT
TGTAGTCGGCCAATGTACGACCATCCTCCAACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCGGGCGGGATTCCCTCCTTGTCCTGTATCTTAGCCTT
GACGTTATCGATGGTGTCGGAGCTCTCCACCTCGAGTGTGATCGTCTTTCCCGTTAAGGTCTTGACAAAGATCTGCATGCCACCACGGAGCCTGAGGACG
AGATGTAGAGTCGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCTCCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGAGGAA
TGCCCTCCTTGTCTTGAATCTTGGCTTTAACATTGTCGATGGTGTCAGAGCTTTCCACCTCAAGGGTGATCGTC