CANTATAdb - search

Detailed information on CNT30261931

BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-98

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30541357	Brassica rapa	Brassica napus	72.71	54.01	97.71	525	forward
CNT3075198	Brassica rapa	Brassica juncea	90.44	85.25	99.85	653	forward

Expression of CNT30261931

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MISFQENETLKATTETQHQVKGRLLLDVVVG*

>peptide 2 (31 aa)
MPQTHTHTNHDKFSRKRDIKSHHGDATPSEG*

>peptide 3 (52 aa)
RNDTARHSPIYNVTTRFETKLSRVKKIYSKIETFEWILERKEKERSIIQEAL*

>peptide 4 (61 aa)
MRRCWSGGMPSLSWILALTLSIVSELSTSSVMVLPVKVLTKICMPPRSLRTRCRVDSFWML*

Sequence

>CNT30261931
CAGAAACGACACAGCTAGGCATTCACCCATCTACAACGTAACCACAAGATTCGAAACAAAACTTTCAAGAGTAAAGAAAATATATTCCAAGATAGAAACA
TTCGAATGGATCTTAGAACGGAAAGAGAAAGAGAGATCAATTATTCAAGAGGCTTTATAATGCCTCAAACACACACAAACCATGATAAGTGAGAAAGAGA
GATCAATTATTTAAGAGGCTTTATAATGCCTCAAACACACACACACACAAACCATGATAAGTTTTCAAGAAAACGAGACATTAAAAGCCACCACGGAGAC
GCAACACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTC
TGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTATCAATCGTGTCCGAGCTCTCGACCTCCAGTGTGATGGTCTTACCAGTCAAGGTCTTG
ACAAAGATCTGCATGCCACCACGGAGCCTGAGGACGAGATGTAGAGTCGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCTCCCGTCCTCGAGCTGCT
TTCCGGCGAAGATGAGCCTCTGCTGATCCGGAGGAATGCCCTCCTTGTCTTGAATCTTGGCTTTAACATTGTCGATGGTGTCAGAGCTTTCCACCTCAAG
GGTGATCGTCTTTCCCGTTAAG