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Detailed information on CNT30261872


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76FS3|TBB6_ORYSJ, E-value = 1e-114

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692476Brassica rapaOryza sativa36.1655.8581.25320forward
CNT30675224Brassica rapaSetaria viridis56.0559.6982.46496forward
CNT30522155Brassica rapaSetaria italica35.7135.9586.71316forward
CNT30641079Brassica rapaNymphaea colorata35.4842.2684.71314forward
CNT30534291Brassica rapaEucalyptus grandis20.6828.7383.61183forward
CNT30516889Brassica rapaJuglans regia24.8636.3681.36220forward
CNT30377201Brassica rapaArabidopsis thaliana46.3371.6883.17410forward
CNT30728063Brassica rapaCorchorus capsularis48.8149.7782.64432forward
CNT30381383Brassica rapaManihot esculenta39.5519.9283.71350forward
CNT30402401Brassica rapaBeta vulgaris32.7724.4182.41290forward
CNT30629386Brassica rapaVigna unguiculata17.7460.8584.08157forward
CNT30196370Brassica rapaPisum sativum47.3443.9784.01419forward
CNT30486254Brassica rapaOlea europaea19.7745.6983.43175forward
CNT30710178Brassica rapaGlycine max30.7364.1581.99272forward
CNT3092760Brassica rapaSolanum tuberosum20.2325.8786.03179forward
CNT30291318Brassica rapaTriticum aestivum29.0477.1882.1257forward
CNT30223001Brassica rapaHordeum vulgare13.1141.7389.66116forward
CNT30390564Brassica rapaTriticum turgidum22.4965.4686.43199forward
CNT30567082Brassica rapaActinidia chinensis37.475.2385.5331forward
CNT30586804Brassica rapaMusa acuminata25.6529.483.26227forward
CNT30542792Brassica rapaBrassica napus28.5958.2982.21253forward
CNT30511260Brassica rapaSolanum lycopersicum20.1144.1785.39178forward
CNT30553024Brassica rapaOryza glaberrima43.8427.1781.7388forward
CNT30442409Brassica rapaAegilops tauschii38.0850.380.42337forward
CNT30252641Brassica rapaAvena sativa57.0662.1280.99505forward
CNT30614070Brassica rapaArabis alpina40.7926.1282.83361forward
CNT3015387Brassica rapaZea mays35.4819.4181.21314forward
CNT3041960Brassica rapaChlamydomonas reinhardtii18.1947.2180.12161forward
CNT30608822Brassica rapaGossypium raimondii35.1446.4281.03311forward
CNT30203517Brassica rapaHelianthus annuus66.2152.1485.49586forward
CNT30627268Brassica rapaDaucus carota49.635.4681.09439forward
CNT30681848Brassica rapaTriticum urartu61.5861.5883.85545forward
CNT30722533Brassica rapaTriticum spelta39.4461.2380.23349forward
CNT30341625Brassica rapaEragrostis tef69.0462.6780.52611forward
CNT30368415Brassica rapaSorghum bicolor45.3138.9781.55401forward
CNT30595966Brassica rapaOryza meridionalis21.5831.1687.96191forward
CNT30369350Brassica rapaOryza glumipatula39.2149.9383347forward
CNT30433323Brassica rapaPapaver somniferum52.7742.880.51467forward
CNT30570854Brassica rapaVitis vinifera17.2976.1285.62153forward
CNT30706519Brassica rapaPrunus avium45.248.2582.25400forward
CNT3033661Brassica rapaTheobroma cacao19.8984.6282.39176forward
CNT3057379Brassica rapaAmborella trichopoda17.455.286.36154forward
CNT3024558Brassica rapaPopulus trichocarpa69.3833.6481.11614forward
CNT30322043Brassica rapaAsparagus officinalis71.0775.1584.74629forward
CNT30119164Brassica rapaCitrus clementina34.1264.8183.11302forward
CNT3036150Brassica rapaCucumis melo11.0729.0888.7898forward
CNT30330123Brassica rapaDioscorea rotundata37.1832.3283.59329forward
CNT30150001Brassica rapaBrachypodium distachyon11.7532.9185.58104forward
CNT3099978Brassica rapaOryza rufipogon36.0539.3884.64319forward
CNT30575061Brassica rapaOryza barthii43.8442.6882.47388forward
CNT30117026Brassica rapaOryza nivara25.233.1882.96223forward
CNT30333708Brassica rapaCynara cardunculus37.8541.3682.69335forward
CNT3049477Brassica rapaCucumis sativus15.7148.9485.61139forward

Expression of CNT30261872

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MQESLPPKHRRELLAHPPKHLLDRSRVTNKSRRHRETLGRNVADAGLDIVWDPFDKVRRVLVLDVDHLLVHFFSAHFAAEHR*

>peptide 2 (75 aa)
MLLSASVNSISSIPSPVYQCKKAFLLNIAVNCSLTLLNISWIEVELPTKVDAIERPLGGMSQTLDLTLFGIHSTK*

>peptide 3 (44 aa)
MKKWRRGKGIRLTASLRRSELSWPGKRRQHVTPLMVAEIRWFRSP

>peptide 4 (45 aa)
SKTRENCWVKQSLKPNLNNIYKPKQERSGPKRQNLIFCFTDSPTN*

Sequence

>CNT30261872
ATCAAAGACACGGGAAAATTGTTGGGTAAAACAGAGCTTAAAACCAAACCTTAACAATATATATAAACCGAAACAAGAAAGATCAGGACCAAAACGGCAA
AACCTCATCTTCTGTTTTACAGATTCACCCACAAATTAGTTTTCATTACAATTTACACCCAAAACAATAAAGATCAATAGCGAAATACGAAAACAAACTT
AACGATCTAAAGATCTCAAGCCTCGAGCTCTTCCTCTTCCTCTTCATACTCCTCCTCATCCGCTGTAGCATCCTGATACTGCTGATACTCAGCCACAAGG
TCATTCATGTTGCTCTCCGCTTCAGTAAACTCCATCTCATCCATCCCTTCTCCTGTATACCAATGCAAGAAAGCCTTCCTCCTAAACATCGCCGTGAACT
GCTCGCTCACCCTCCTAAACATCTCCTGGATCGAAGTCGAGTTACCAACAAAAGTCGACGCCATCGAGAGACCCTTGGGAGGAATGTCGCAGACGCTGGA
CTTGACATTGTTTGGGATCCATTCGACAAAGTAAGAAGAGTTCTTGTTCTGGACGTTGATCATCTGCTCGTCCACTTCTTTAGTGCTCATTTTGCCGCGG
AACATCGCTGACGCGGTTAAGTAGCGTCCGTGTCTTGGGTCTGCGGCGCACATCATGTTCTTGGCGTCCCACATTTGTTGGGTGAGCTCGGGACTGATAA
GGCGCGGTATTGCTGGGAGCCGCGGGATGTGAGAGGTGCGAAACCGACCATGAAGAAGTGGAGACGAGGGAAGGGGATTAGGTTGACCGCGAGCTTGCGG
AGGTCGGAGTTGAGCTGGCCAGGGAAACGGAGACAGCATGTTACGCCGCTCATGGTTGCAGAGATCAGGTGGTTTAGATCTCCAA