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Detailed information on CNT30261854

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30678839	Brassica rapa	Setaria viridis	82.36	64.09	95.1	878	forward
CNT30519050	Brassica rapa	Juglans regia	82.27	77.96	97.04	877	forward
CNT30375631	Brassica rapa	Arabidopsis thaliana	50.84	30.76	100	542	forward
CNT30619379	Brassica rapa	Sesamum indicum	73.17	100	95.64	780	forward
CNT30200729	Brassica rapa	Pisum sativum	82.27	36.06	97.38	877	forward
CNT3048154	Brassica rapa	Prunus dulcis	82.27	83.6	96.92	877	forward
CNT30224448	Brassica rapa	Hordeum vulgare	73.17	98.61	94.36	780	forward
CNT30544401	Brassica rapa	Brassica napus	82.18	68.49	100	876	forward
CNT30239033	Brassica rapa	Brassica oleracea	82.18	64.51	99.89	876	forward
CNT30444212	Brassica rapa	Aegilops tauschii	82.36	67.49	95.33	878	forward
CNT30206557	Brassica rapa	Helianthus annuus	75.33	37.23	96.89	803	forward
CNT30365697	Brassica rapa	Sorghum bicolor	82.65	97.03	93.98	881	forward
CNT30413997	Brassica rapa	Papaver somniferum	63.41	80.96	95.71	676	forward
CNT3036408	Brassica rapa	Cucumis melo	82.27	82.97	97.49	877	forward

Expression of CNT30261854

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MHPFQKSGFVARISSRITTVIRVVVTIKQTITDLMSHSQFHSLNSFILTHAWLNL*

>peptide 2 (50 aa)
VVLDFTLQHCFRTNTVSGLAKAGCLVAFSLTLFVPGFGDIRKLCVRSNQN*

>peptide 3 (37 aa)
RFRLYIAALLPNKHRLRVGESRLFSCIFLDTFRAGVW*

>peptide 4 (50 aa)
MIYPHHDEISKITRACRPRCELVEYISVARVRPRTSKGITDLLLPQTSLA*

Sequence

>CNT30261854
GTCGTTTTAGACTTTACATTGCAGCACTGCTTCCGAACAAACACCGTCTCCGGGTTGGCGAAAGCAGGCTGTTTAGTTGCATTTTCCTTGACACTTTTCG
TGCCGGGGTTTGGTGATATCCGGAAGCTATGCGTACGATCCAACCAAAACTGAAGTCTTGGCCAAGGATGAACGCATAACCACGGAATCAGCAGGGACGT
AGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAATTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTAC
CCGGGCCTGTCGGCCAAGGTGTGAACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA
ACTTCCTTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCCGGCCGTGAAGGGATGCCTCCACGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGG
AATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTCAATCCTTACTATGTCTG
GACCTGGTAAGTTTCCCCGTGTTGAGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAA
CCCTAATTCTCCGTCACCCGTTACCACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCAGCACTAAGG
CCATGCGATCCGTCGAGTTATCATGAATCATCAGAGCAACGGGCAGAGCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTT
GTTGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGTAGTTACCATCAAACAAACTATAACTGATTTAATGAGCCATTCGCAGTTTCACAGTC
TGAATTCGTTCATACTTACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAGGA