Detailed information on CNT30261808


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30283192Brassica rapaChenopodium quinoa78.0977.4997.061632reverse complement
CNT3021669Brassica rapaCitrullus lanatus78.2372.7397.551635forward
CNT30508032Brassica rapaNicotiana attenuata76.690.7196.441601forward
CNT30638986Brassica rapaCapsicum annuum77.4296.4297.531618reverse complement
CNT30544402Brassica rapaBrassica napus8080.1599.881672forward
CNT30309594Brassica rapaCamelina sativa78.3784.7899.391638reverse complement
CNT3083350Brassica rapaBrassica juncea8089.4699.881672forward
CNT3036478Brassica rapaCucumis melo78.2353.7897.551635forward

Expression of CNT30261808

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MIYPHHDEISKITRACRPRCELVEYISVARVRPRTSKGITDLLLPQTSLA*

>peptide 2 (44 aa)
MLSQLFVFHKSKNFTSDYEIRMPPTVPVNHYSDPEGQHNRIEIL*

>peptide 3 (50 aa)
VVLDFTLQHCFRTNTVSGLAKAGCLVAFSLTLFVPGFGDIRKLCVRSNQN*

>peptide 4 (32 aa)
MKYECPRLSLLIITPIPKANTIGSKSYDVIPC*

>peptide 5 (33 aa)
MTTGRINQVAFINQDKTTSYSRKHLSECSRSSE*

>peptide 6 (37 aa)
RFRLYIAALLPNKHRLRVGESRLFSCIFLDTFRAGVW*

>peptide 7 (55 aa)
MHPFQKSGFVARISSRITTVIRVVVTIKQTITDLMSHSQFHSLNSFILTHAWLNL*

Sequence

>CNT30261808
GTCGTTTTAGACTTTACATTGCAGCACTGCTTCCGAACAAACACCGTCTCCGGGTTGGCGAAAGCAGGCTGTTTAGTTGCATTTTCCTTGACACTTTTCG
TGCCGGGGTTTGGTGATATCCGGAAGCTATGCGTACGATCCAACCAAAACTGAAGTCTTGGCCAAGGATGAACGCATAACCACGGAATCAGCAGGGACGT
AGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAATTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTAC
CCGGGCCTGTCGGCCAAGGTGTGAACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA
ACTTCCTTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCCGGCCGTGAAGGGATGCCTCCACGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGG
AATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTCAATCCTTACTATGTCTG
GACCTGGTAAGTTTCCCCGTGTTGAGTCAAATTAAGCCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCCTTGCGACCAT
ACTCCCCCCGGAACCCAAAAACTTTGATTTCTCATAAGGTGCCAGCGGAGTCCTAAAAGCAACATCCGCTGATCCCTGGTCGGCATCGTTTATGGTTGAG
ACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCGCAGTTGTTCGTCTTTCATAAA
TCCAAGAATTTCACCTCTGACTATGAAATACGAATGCCCCCGACTGTCCCTGTTAATCATTACTCCGATCCCGAAGGCCAACACAATAGGATCGAAATCC
TATGATGTTATCCCATGCTAATGTATACAGAGCGTAGGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGCGCCGGAGGCACGACCCGGCCAGTTA
AGGCCAGGAGCGTATCGCCGACAGAAGAGACAAGCCGACCGGTGCTCACCAAAGGCGGACCGGGCGACCCATCCCAAGGTTCAACTACGAGCTTTTTAAC
TGCAACAACTTAAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAATGGATCCTCGTTAAGGGATTTAGATTGTAC
TCATTCCAATTACCAGACTCAAAGAGCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTG
GATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTTACCACCATGGTAGGCCACTATCCTACCATCGAAAGTT
GATAGGGCAGAAATTTGAATGATGCGTCGCCAGCACTAAGGCCATGCGATCCGTCGAGTTATCATGAATCATCAGAGCAACGGGCAGAGCCCGCGTCGAC
CTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGTAGTTACCATCAAACA
AACTATAACTGATTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTCGTTCATACTTACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACT
GGCAGGATCAACCAGGTAGCATTCATAAATCAGGACAAGACCACGTCATATTCCCGCAAACATCTCTCTGAGTGTTCTCGATCCAGCGAATAAGGGGTTT
CCTTAAACCCACTGGGTACGAGGTCGAGGAAACACTAATCCACCTCAAACATGCCTAGCATGGTGGGTTACACACAAGCTATATGGCATCACACTCTAAC
TCTACAACACTAACAACAATATTATCACTAAACAACTCAACCAGTTAGTCACTCCCTTACCAAAAGCTGACTAACCTAAAAAAACAAGCA