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Detailed information on CNT3026176


BLAST search results

BLAST vs Swiss-Prot:
sp|P45730|PALY_POPTR, E-value = 5e-132

BLAST vs NONCODE:
NONSTUT002996, E-value = 2e-47

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30710382Populus trichocarpaGlycine max27.0831.8886.83205forward
CNT30568715Populus trichocarpaActinidia chinensis31.1848.3682.63236forward
CNT30510882Populus trichocarpaSolanum lycopersicum38.9776.8282.37295forward
CNT30144087Populus trichocarpaMedicago truncatula39.188.181.42296forward

Expression of CNT3026176

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MGGDWIGEILKLRTVGGHCYFSSLEAIIQTWIPASSEIRWQSIVVEIIYELTELSK*

>peptide 2 (54 aa)
LILLSIAEFPLSYAALALSTSFGKRAFSSSSKASIFWKTEVLKFFSFSPFSNAC*

>peptide 3 (29 aa)
MLLLRSQLLLAKEPSVLPRKLQSFGRLKC*

Sequence

>CNT3026176
TTGATCTTGTTGTCAATTGCTGAATTCCCACTATCATATGCTGCTCTTGCGCTCTCAACTTCTTTTGGCAAAAGAGCCTTCAGTTCTTCCTCGAAAGCTT
CAATCTTTTGGAAGACTGAAGTGCTAAAATTCTTCTCGTTCTCTCCATTTTCCAACGCATGTTAAAACCCTCTTGGATACTTGACTAACTGTGTTCTTGA
CTGCGCTCTTCAAGTTCTCTTCCAAGTGCCTCAAGTCGATAGCTTGGCAAAGAGCCACTAAGAAGGTTGTGGACATGAGCTTCAAGATATCAACAGCTTC
TGCTGTCTTTCTTGAAGAGATAAGCCCCAACGAGTTAACATCTTGATTGTGCTGCTCGGCACTTTGCACATGGGTGGTGACTGGATTGGCGAGATACTGA
AGCTCAGAACAGTAGGAGGCCATTGCTATTTCAGCTCCCTTGAAGCCATAATCCAAACTTGGATTCCTGCTAGCAGTGAGATTCGATGGCAATCCATTGT
TGTAGAAATCATTTACGAGCTCACTGAACTGAGCAAATAGCAGCTTGCCTATTGATGCAATAGCCAAACGTACATTATCCATTGAGACTCCAATTGGAGT
TCCCTGGAAGTTACCACCATGTATAGCCTTGTTCCTTGAAACATCAATTAGAGGGTTGTCGTTCACTGAATTAATCTCTCTTTCAATTGACTTGGTCGAG
AATCGGATTACTTCAATCTGGGGACCAAGCCATTGGGGTGAAGTCCTTAGAGCATAG