Detailed information on CNT30261455


BLAST search results

BLAST vs Swiss-Prot:
sp|P27985|RBS2_BRANA, E-value = 5e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30514551Brassica rapaJuglans regia23.4212.7587.363forward
CNT30377165Brassica rapaArabidopsis thaliana66.1722.7390.45178forward
CNT30311891Brassica rapaCamelina sativa66.1721.0289.89178forward
CNT30479769Brassica rapaArabidopsis halleri64.3122.790.75173forward

Expression of CNT30261455

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MEVISVLLLRVTGNAADDFKPVNGATMVA*

>peptide 2 (52 aa)
PTGGHTYKSHLQLINRNSLLYIHIFQSANSSSVACNGSNISVAFAGDWECSG*

Sequence

>CNT30261455
TTCCGACTGGTGGCCACACCTATAAATCCCATTTGCAGTTAATAAATAGGAATTCCCTTTTGTATATACACATTTTTCAATCCGCTAACTCTTCCTCCGT
TGCTTGCAATGGAAGTAATATCAGTGTTGCTTTTGCGGGTGACTGGGAATGCAGCGGATGACTTCAAGCCGGTGAATGGAGCAACCATGGTGGCTTGAGC
CGGTGAGGTAGCCACAGCGGCGGAGGAGAGCATAGAGGAAGCCATTACTACTTCTTTTTCTCTTTTCTC