Detailed information on CNT30261376


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 3e-52

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317063Brassica rapaCorylus avellana45.531.4980.77182forward
CNT30514732Brassica rapaJuglans regia46.520.9980.65186forward
CNT30616510Brassica rapaSesamum indicum20.55.9487.882forward
CNT30268066Brassica rapaChenopodium quinoa2010.9987.580forward
CNT30543822Brassica rapaBrassica napus66.7592.0798.88267forward
CNT30620550Brassica rapaCajanus cajan47.7515.9481.68191forward
CNT30115242Brassica rapaEutrema salsugineum43.7534.9392175forward

Expression of CNT30261376

Peptides detected in this lncRNA

>peptide 1 (89 aa)
MSIDYYMIVLERKLSTGEAWWLVGDENDALDLTVVVESNDSNKGVRVLRLALLHFLQHLRRVGASEQRKLPHCPITAIVVSRCASMLTVH

>peptide 2 (42 aa)
FFFFKSQRYRNYIYISINQTFDNPIENVPDRNPKRIKTGNWK*

Sequence

>CNT30261376
TTTTTTTTTTTTAAGTCTCAACGATATAGAAATTACATATATATATCCATAAATCAGACATTTGACAATCCGATAGAAAATGTCCCAGACAGAAATCCAA
AGAGGATAAAAACAGGCAATTGGAAGTGAAATGAGTATAGATTATTATATGATTGTTTTAGAAAGGAAATTAAGCACCGGTGAAGCTTGGTGGCTTGTAG
GCGATGAAAATGATGCACTGGACCTGACGGTTGTTGTCGAATCCAATGATTCTAATAAAGGCGTTAGGGTACTCCGTCTTGCACTCTTGCACTTCCTTCA
ACACTTGAGAAGAGTCGGTGCATCCGAACAAAGGAAGCTTCCACATTGTCCAATAACGGCCATCGTAGTATCCAGGTGTGCTTCCATGCTCACGGTACAC