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Detailed information on CNT30261371


BLAST search results

BLAST vs Swiss-Prot:
sp|O23255|SAHH1_ARATH, E-value = 2e-70

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675638Brassica rapaSetaria viridis77.5165.5984.88324forward
CNT30376211Brassica rapaArabidopsis thaliana99.0457.2691.06414forward
CNT30619260Brassica rapaSesamum indicum74.1629.1183.23310forward
CNT3072357Brassica rapaQuercus suber60.7724.7387.8254forward
CNT30380227Brassica rapaManihot esculenta31.3431.4194.66131forward
CNT30402445Brassica rapaBeta vulgaris33.7331.7692.2141forward
CNT30200315Brassica rapaPisum sativum23.9219.3890100forward
CNT30709695Brassica rapaGlycine max39.7149.792.77166forward
CNT30543653Brassica rapaBrassica napus77.5146.9698.15324forward
CNT3076639Brassica rapaBrassica juncea42.3427.793.79177forward
CNT30612558Brassica rapaArabis alpina76.5684.8888.12320forward
CNT30607325Brassica rapaGossypium raimondii32.7810.6291.24137forward
CNT30231757Brassica rapaAnanas comosus30.6248.6786.72128forward
CNT30680065Brassica rapaTriticum urartu21.5323.7587.7890forward
CNT30358660Brassica rapaLactuca sativa26.3219.8987.27110forward
CNT30573685Brassica rapaVitis vinifera20.8122.3187.3687forward
CNT3021984Brassica rapaPopulus trichocarpa76.7915.0184.42321forward
CNT30329805Brassica rapaDioscorea rotundata27.5119.5991.3115forward
CNT30103876Brassica rapaOryza rufipogon76.0870.283.96318forward
CNT30117878Brassica rapaOryza nivara76.7971.3383.49321forward
CNT30723539Brassica rapaLupinus angustifolius64.3521.1384.39269forward

Expression of CNT30261371

Peptides detected in this lncRNA

>peptide 1 (94 aa)
SSKCLGRTYTFFSYLPLDFSFQSSSWAITWEGLESEHVDLVVKVTNVANNSIVLHLPHVVNHDDVFVTGGGDKDVSFGNNILKGQNLKPFHHSL*

>peptide 2 (43 aa)
RPNAWVERTPSSRTCRSTSRSKAQAGQSPGKVSSPSMSISLSK*

>peptide 3 (41 aa)
MLQTIALFFIFLMWSTMMMSLLPVVVTKMSASETTSSRVKT*

>peptide 4 (40 aa)
MGSISVTITLAPAVFMAAAQPFPTSPYPQTTTTFPAIMTSV

Sequence

>CNT30261371
CTCGTCCAAATGCTTGGGTAGAACGTACACCTTCTTCTCGTACTTGCCGCTCGACTTCTCGTTCCAAAGCTCAAGCTGGGCAATCACCTGGGAAGGTCTC
GAGTCCGAGCATGTCGATCTCGTTGTCAAAGTGACCAATGTTGCAAACAATAGCATTGTTCTTCATCTTCCTCATGTGGTCAACCATGATGATGTCTTTG
TTACCGGTGGTGGTGACAAAGATGTCAGCTTCGGAAACAACATCCTCAAGGGTCAAAACTTGAAGCCCTTCCATCATAGCCTGTAGGGCACAGATGGGAT
CGATCTCCGTCACAATAACTCTAGCACCAGCGGTCTTCATGGCAGCGGCACAACCCTTTCCGACATCACCATATCCGCAGACAACGACAACCTTTCCGGC
GATCATGACATCAGTGGC