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Detailed information on CNT30261311


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697185Brassica rapaOryza sativa49.6148.8484.13189forward
CNT30677073Brassica rapaSetaria viridis42.2610.6882.61161forward
CNT30523788Brassica rapaSetaria italica45.6716.5681.61174forward
CNT30640852Brassica rapaNymphaea colorata49.0853.8984.49187forward
CNT30373585Brassica rapaArabidopsis thaliana23.6236.5987.7890forward
CNT30631336Brassica rapaVigna unguiculata24.9340.0887.3795forward
CNT30235921Brassica rapaBrassica oleracea30.7153.1895.73117forward
CNT3017878Brassica rapaZea mays46.4625.6283.62177forward
CNT30479631Brassica rapaArabidopsis halleri37.820.3190.97144forward
CNT30367502Brassica rapaSorghum bicolor50.3930.3383.85192forward
CNT3029174Brassica rapaTheobroma cacao31.2311.8683.19119forward
CNT3036858Brassica rapaCucumis melo43.8329.380.24167forward
CNT30104230Brassica rapaOryza rufipogon60.899.4282.76232forward
CNT30117954Brassica rapaOryza nivara32.288.8985.37123forward
CNT30557185Brassica rapaPanicum hallii46.4627.8382.49177forward
CNT30551796Brassica rapaOryza brachyantha47.7723.2482.97182forward
CNT3040010Brassica rapaMarchantia polymorpha30.7125.7181.2117forward

Expression of CNT30261311

Peptides detected in this lncRNA

>peptide 1 (46 aa)
VDFDARDDVLLDENVDHLLAVYGGLVESFLEQDSSGDVLSQSWSRH*

Sequence

>CNT30261311
TGTCGACTTTGATGCCAGGGACGATGTTCTGCTGGACGAGAACGTCGACCATCTTCTTGCCGTCTACGGTGGACTGGTAGAGAGTTTCCTCGAACAGGAT
AGCTCCGGAGATGTACTGTCCCAGTCCTGGAGCCGACACTAGCAGTGTCCGGTAAGCCTGACGGTTAGCCTCCGTGTTCTCTAGCCCAATTGACGCTAAA
CGCTTCCCGCAAGTCGCGTTTGACTCATCCATCGCTAAGATTCCGCGTTGGCGGAGTAGGAGACTCTGTCCTTTGAGCCAGTCAGATTTCACCGGTGAGG
CTTTGAACAGAGTCGCAGAGCTTGACGCCATCGTTGGTTATCTTCTTCTTGTTCACGACTACACGCTTATAACGCTCTGAC